ModelTrimmer.cc File Reference

Silly pilot app that reads a model file, removes models that fail certain criteria, and then dumps it back out. This is hardcoded in lots of terrible ways. Ideally, this concept should be generalized and run strategically during the actual generation of a SEWING construct, but that's for another day/PhD. More...

#include <devel/init.hh>
#include <protocols/legacy_sewing/hashing/Hasher.hh>
#include <protocols/legacy_sewing/conformation/Model.hh>
#include <protocols/legacy_sewing/conformation/AssemblyFactory.hh>
#include <protocols/legacy_sewing/conformation/Assembly.hh>
#include <protocols/legacy_sewing/util/io.hh>
#include <core/types.hh>
#include <core/id/AtomID.hh>
#include <core/pose/Pose.hh>
#include <core/import_pose/import_pose.hh>
#include <protocols/features/SmotifFeatures.hh>
#include <utility/io/izstream.hh>
#include <utility/string_util.hh>
#include <utility/vector1.hh>
#include <utility/file/FileName.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/Tracer.hh>
#include <map>
#include <set>
#include <iterator>

Functions
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("ModelTrimmer")

Detailed Description

Silly pilot app that reads a model file, removes models that fail certain criteria, and then dumps it back out. This is hardcoded in lots of terrible ways. Ideally, this concept should be generalized and run strategically during the actual generation of a SEWING construct, but that's for another day/PhD.

Author

Tim Jacobs, Doonam Kim

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References all, argv, convert(), basic::Tracer::Debug, utility::excn::Exception::display(), create_a3b_hbs::i, basic::init(), enumerate_junctions::int, create_a3b_hbs::j, basic::options::OptionKeys::legacy_sewing::leave_antiparallel_way_H_bonded_models_by_terminal_strands, basic::options::OptionKeys::legacy_sewing::leave_certain_model_ids, basic::options::OptionKeys::legacy_sewing::leave_models_by_ss_num, basic::options::OptionKeys::legacy_sewing::leave_models_with_E_terminal_ss, basic::options::OptionKeys::legacy_sewing::leave_models_with_H_terminal_ss, basic::options::OptionKeys::legacy_sewing::leave_parallel_way_H_bonded_models_by_terminal_strands, basic::options::OptionKeys::legacy_sewing::leave_these_model_ids, basic::options::OptionKeys::legacy_sewing::legacy_sewing, localtime(), basic::options::OptionKeys::legacy_sewing::max_helix_length, basic::options::OptionKeys::legacy_sewing::max_loop_length, basic::options::OptionKeys::legacy_sewing::max_strand_length, basic::options::OptionKeys::legacy_sewing::min_helix_length, basic::options::OptionKeys::legacy_sewing::min_loop_length, basic::options::OptionKeys::legacy_sewing::min_strand_length, closure_error::model, basic::options::OptionKeys::legacy_sewing::model_file_name, basic::options::OptionKeys::legacy_sewing::model_should_have_at_least_1_E, basic::options::OptionKeys::legacy_sewing::model_should_have_at_least_1_E_at_terminal_segment, basic::options::OptionKeys::legacy_sewing::model_should_have_at_least_1_H, basic::options::OptionKeys::legacy_sewing::model_should_have_this_num_of_ss, closure_error::models, basic::options::OptionKeys::legacy_sewing::new_model_file_name, basic::options::option, basic::options::OptionKeys::legacy_sewing::remove_all_dssp, basic::options::OptionKeys::legacy_sewing::remove_any_dssp, utility::string_split(), predPRE::t, basic::options::TR, basic::options::OptionKeys::inout::dbms::user, utility_exit_with_message, and basic::Tracer::TracerProxy::visible().

Variable Documentation

TR

basic::Tracer TR("ModelTrimmer") ( "ModelTrimmer"  )

static