extract_pdbs_test.cc File Reference

#include <core/types.hh>
#include <core/conformation/Residue.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/chemical/ResidueTypeSet.fwd.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/scoring/sasa.hh>
#include <core/scoring/rms_util.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/ScoreFunction.fwd.hh>
#include <core/pack/pack_rotamers.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pose/Pose.hh>
#include <core/pose/Pose.fwd.hh>
#include <devel/init.hh>
#include <basic/options/option.hh>
#include <basic/options/after_opts.hh>
#include <basic/basic.hh>
#include <basic/Tracer.hh>
#include <basic/database/open.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <protocols/moves/Mover.hh>
#include <core/io/silent/silent.fwd.hh>
#include <core/io/silent/ProteinSilentStruct.hh>
#include <core/io/silent/SilentFileData.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/optimization/AtomTreeMinimizer.hh>
#include <core/optimization/MinimizerOptions.hh>
#include <utility/vector1.hh>
#include <utility/excn/Exceptions.hh>
#include <fstream>
#include <iostream>
#include <string>
#include <basic/options/keys/in.OptionKeys.gen.hh>

Classes
class	SilentProlineFixMover

Functions
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("apps.pilot.yiliu.silent")

Detailed Description

Author

James Thompson

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, begin, test.T009_Exceptions::e, end, in::file::fullatom(), basic::init(), subloop_histogram::iterator, option, beta_nonlocal::pose, basic::options::OptionKeys::frags::scoring::scoring, sfd, in::file::silent(), extract_by_sidechain_sasa_score::tags, in::file::tags(), TR, basic::options::OptionKeys::inout::dbms::user, and utility_exit_with_message.

Variable Documentation

TR

basic::Tracer TR("apps.pilot.yiliu.silent") ( "apps.pilot.yiliu.silent"  )

static

Referenced by main().