spanfile_from_pdb.cc File Reference

Write a spanfile from a PDB file. More...

#include <devel/init.hh>
#include <core/conformation/membrane/Span.fwd.hh>
#include <core/conformation/membrane/SpanningTopology.hh>
#include <protocols/membrane/util.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/mp.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <core/types.hh>
#include <core/pose/Pose.hh>
#include <core/pose/PDBInfo.hh>
#include <core/import_pose/import_pose.hh>
#include <basic/Tracer.hh>
#include <utility/excn/Exceptions.hh>
#include <utility/string_util.hh>
#include <string>

Functions
template<typename T_ >
void	show (utility::vector1< T_ > vector)
Pose	read_pose ()
Real	read_thickness ()
void	spanfile_for_each_chain (Pose &pose, Real thickness, std::string spanfile)
void	spanfile_from_pdb ()
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("apps.pilot.jkleman.spanfile_from_pdb")

Detailed Description

Write a spanfile from a PDB file.

last Modified: 03/18/15

Author

JKLeman (julia.nosp@m..koe.nosp@m.hler1.nosp@m.982@.nosp@m.gmail.nosp@m..com)

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, test.T009_Exceptions::e, basic::init(), and spanfile_from_pdb().

read_pose()

Pose read_pose

(

)

References CREATE_EXCEPTION, basic::Tracer::Debug, option, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, docking::s, TR, and basic::options::OptionKeys::inout::dbms::user.

Referenced by spanfile_from_pdb().

read_thickness()

Real read_thickness

(

)

References basic::Tracer::Debug, option, thickness, TR, and basic::options::OptionKeys::inout::dbms::user.

Referenced by spanfile_from_pdb().

show()

template<typename T_ >

void show

(

utility::vector1< T_ >

vector

)

References create_a3b_hbs::i, utility::to_string(), and TR.

spanfile_for_each_chain()

void spanfile_for_each_chain	(	Pose &	pose,
		Real	thickness,
		std::string	spanfile
	)

References predPRE::chain, create_a3b_hbs::i, create_a3b_hbs::pdb_info, beta_nonlocal::pose, basic::options::OptionKeys::in::file::spanfile, thickness, and utility::trim().

Referenced by spanfile_from_pdb().

spanfile_from_pdb()

void spanfile_from_pdb

(

)

References option, clean_pdb_keep_ligand::pdbfile, beta_nonlocal::pose, read_pose(), read_thickness(), docking::s, secstruct(), basic::options::OptionKeys::in::file::spanfile, spanfile_for_each_chain(), thickness, TR, and utility::trim().

Referenced by main().

Variable Documentation

TR

basic::Tracer TR("apps.pilot.jkleman.spanfile_from_pdb") ( "apps.pilot.jkleman.spanfile_from_pdb"  )

static

Referenced by read_pose(), read_thickness(), show(), and spanfile_from_pdb().