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Rosetta
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Functions | |
| RealOptionKey const | trRosetta::theta_constraint_weight ("trRosetta:theta_constraint_weight") |
| BooleanOptionKey const | unfolded_state::unfolded_state ("unfolded_state") |
| FileOptionKey const | unfolded_state::unfolded_energies_file ("unfolded_state:unfolded_energies_file") |
| FileOptionKey const | unfolded_state::split_unfolded_energies_file ("unfolded_state:split_unfolded_energies_file") |
| StringOptionKey const | unfolded_state::split_unfolded_energies_atom_type ("unfolded_state:split_unfolded_energies_atom_type") |
| BooleanOptionKey const | wum::wum ("wum") |
| IntegerOptionKey const | wum::n_slaves_per_master ("wum:n_slaves_per_master") |
| IntegerOptionKey const | wum::n_masters ("wum:n_masters") |
| IntegerOptionKey const | wum::memory_limit ("wum:memory_limit") |
| StringOptionKey const | wum::extra_scorefxn ("wum:extra_scorefxn") |
| FileOptionKey const | wum::extra_scorefxn_ref_structure ("wum:extra_scorefxn_ref_structure") |
| IntegerOptionKey const | wum::extra_scorefxn_relax ("wum:extra_scorefxn_relax") |
| RealOptionKey const | wum::trim_proportion ("wum:trim_proportion") |
| BooleanOptionKey const | blivens::blivens ("blivens") |
| BooleanOptionKey const | blivens::disulfide_scorer::disulfide_scorer ("blivens:disulfide_scorer") |
| RealOptionKey const | blivens::disulfide_scorer::nds_prob ("blivens:disulfide_scorer:nds_prob") |
| RealOptionKey const | blivens::disulfide_scorer::cys_prob ("blivens:disulfide_scorer:cys_prob") |
| StringOptionKey const | blivens::score_type ("blivens:score_type") |
| BooleanOptionKey const | cmiles::cmiles ("cmiles") |
| BooleanOptionKey const | cmiles::kcluster::kcluster ("cmiles:kcluster") |
| IntegerOptionKey const | cmiles::kcluster::num_clusters ("cmiles:kcluster:num_clusters") |
| BooleanOptionKey const | cmiles::jumping::jumping ("cmiles:jumping") |
| IntegerOptionKey const | cmiles::jumping::resi ("cmiles:jumping:resi") |
| IntegerOptionKey const | cmiles::jumping::resj ("cmiles:jumping:resj") |
| BooleanOptionKey const | crossmatch::crossmatch ("crossmatch") |
| RealOptionKey const | crossmatch::clash_dis ("crossmatch:clash_dis") |
| BooleanOptionKey const | dwkulp::dwkulp ("dwkulp") |
| StringOptionKey const | dwkulp::forcePolyAAfragments ("dwkulp:forcePolyAAfragments") |
| BooleanOptionKey const | evolution::evolution ("evolution") |
| FileVectorOptionKey const | evolution::parentlist ("evolution:parentlist") |
| FileVectorOptionKey const | evolution::childlist ("evolution:childlist") |
| StringOptionKey const | evolution::action ("evolution:action") |
| RealOptionKey const | evolution::rms_threshold ("evolution:rms_threshold") |
| RealOptionKey const | evolution::rms_topmargin ("evolution:rms_topmargin") |
| StringOptionKey const | evolution::targetdir ("evolution:targetdir") |
| RealOptionKey const | evolution::padding_score_filter ("evolution:padding_score_filter") |
| RealOptionKey const | evolution::padding_stage2_filter ("evolution:padding_stage2_filter") |
| BooleanOptionKey const | james::james ("james") |
| IntegerOptionKey const | james::min_seqsep ("james:min_seqsep") |
| StringVectorOptionKey const | james::atom_names ("james:atom_names") |
| RealVectorOptionKey const | james::dist_thresholds ("james:dist_thresholds") |
| RealVectorOptionKey const | james::torsion_thresholds ("james:torsion_thresholds") |
| BooleanOptionKey const | james::debug ("james:debug") |
| RealOptionKey const | james::real ("james:real") |
| IntegerOptionKey const | james::n_designs ("james:n_designs") |
| BooleanOptionKey const | james::thread_unaligned ("james:thread_unaligned") |
| BooleanOptionKey const | krassk::krassk ("krassk") |
| BooleanOptionKey const | krassk::tail_mode ("krassk:tail_mode") |
| IntegerOptionKey const | krassk::tail_mode_name ("krassk:tail_mode_name") |
| StringOptionKey const | krassk::tail_output_file_name ("krassk:tail_output_file_name") |
| BooleanOptionKey const | loodo::loodo ("loodo") |
| IntegerOptionKey const | loodo::ins_begin ("loodo:ins_begin") |
| StringOptionKey const | loodo::cap ("loodo:cap") |
| StringOptionKey const | loodo::bot ("loodo:bot") |
| IntegerVectorOptionKey const | loodo::fragAlength ("loodo:fragAlength") |
| IntegerVectorOptionKey const | loodo::fragBlength ("loodo:fragBlength") |
| IntegerOptionKey const | loodo::known ("loodo:known") |
| StringOptionKey const | loodo::fragAnative ("loodo:fragAnative") |
| StringOptionKey const | loodo::fragBnative ("loodo:fragBnative") |
| StringOptionKey const | loodo::gridligpath ("loodo:gridligpath") |
| BooleanOptionKey const | loodo::debug ("loodo:debug") |
| RealOptionKey const | loodo::ca_ratio ("loodo:ca_ratio") |
| RealOptionKey const | loodo::distance_tolerance ("loodo:distance_tolerance") |
| RealOptionKey const | loodo::euler_tolerance ("loodo:euler_tolerance") |
| IntegerOptionKey const | loodo::num_frags ("loodo:num_frags") |
| StringOptionKey const | loodo::use_fraglib ("loodo:use_fraglib") |
| StringOptionKey const | loodo::use_fraglibsc ("loodo:use_fraglibsc") |
| BooleanOptionKey const | loodo::com_in_grid ("loodo:com_in_grid") |
| BooleanOptionKey const | loodo::loud ("loodo:loud") |
| BooleanOptionKey const | loodo::dump_all_As ("loodo:dump_all_As") |
| BooleanOptionKey const | loodo::dump_all_Bs ("loodo:dump_all_Bs") |
| StringOptionKey const | loodo::caphit_rt_file ("loodo:caphit_rt_file") |
| BooleanOptionKey const | murphp::murphp ("murphp") |
| StringOptionKey const | murphp::inv_kin_lig_loop_design_filename ("murphp:inv_kin_lig_loop_design_filename") |
| BooleanOptionKey const | peptide_deriver::peptide_deriver ("peptide_deriver") |
| IntegerVectorOptionKey const | peptide_deriver::pep_lengths ("peptide_deriver:pep_lengths") |
| BooleanOptionKey const | peptide_deriver::skip_zero_isc ("peptide_deriver:skip_zero_isc") |
| BooleanOptionKey const | peptide_deriver::dump_peptide_pose ("peptide_deriver:dump_peptide_pose") |
| BooleanOptionKey const | peptide_deriver::dump_cyclic_poses ("peptide_deriver:dump_cyclic_poses") |
| BooleanOptionKey const | peptide_deriver::dump_prepared_pose ("peptide_deriver:dump_prepared_pose") |
| BooleanOptionKey const | peptide_deriver::dump_report_file ("peptide_deriver:dump_report_file") |
| StringVectorOptionKey const | peptide_deriver::restrict_receptors_to_chains ("peptide_deriver:restrict_receptors_to_chains") |
| StringVectorOptionKey const | peptide_deriver::restrict_partners_to_chains ("peptide_deriver:restrict_partners_to_chains") |
| BooleanOptionKey const | peptide_deriver::do_minimize ("peptide_deriver:do_minimize") |
| RealOptionKey const | peptide_deriver::optimize_cyclic_threshold ("peptide_deriver:optimize_cyclic_threshold") |
| StringOptionKey const | peptide_deriver::report_format ("peptide_deriver:report_format") |
| BooleanOptionKey const | peptide_deriver::report_gzip ("peptide_deriver:report_gzip") |
| BooleanOptionKey const | phil::phil ("phil") |
| IntegerOptionKey const | phil::nloop ("phil:nloop") |
| StringOptionKey const | phil::vall_file ("phil:vall_file") |
| BooleanOptionKey const | ralford::ralford ("ralford") |
| BooleanOptionKey const | ralford::dump_rotamers::dump_rotamers ("ralford:dump_rotamers") |
| IntegerOptionKey const | ralford::dump_rotamers::rsd_index ("ralford:dump_rotamers:rsd_index") |
| StringOptionKey const | ralford::dump_rotamers::rotamer_info_prefix ("ralford:dump_rotamers:rotamer_info_prefix") |
| BooleanOptionKey const | ralford::dump_rotamers::write_rotamers_to_pdbs ("ralford:dump_rotamers:write_rotamers_to_pdbs") |
| BooleanOptionKey const | ralford::dump_rotamers::all_positions ("ralford:dump_rotamers:all_positions") |
| BooleanOptionKey const | robert::robert ("robert") |
| StringOptionKey const | robert::pairdata_input_pdb_list ("robert:pairdata_input_pdb_list") |
| RealOptionKey const | robert::pcs_maxsub_filter ("robert:pcs_maxsub_filter") |
| RealOptionKey const | robert::pcs_maxsub_rmsd ("robert:pcs_maxsub_rmsd") |
| BooleanOptionKey const | robert::pcs_dump_cluster ("robert:pcs_dump_cluster") |
| RealOptionKey const | robert::pcs_cluster_coverage ("robert:pcs_cluster_coverage") |
| BooleanOptionKey const | robert::pcs_cluster_lowscoring ("robert:pcs_cluster_lowscoring") |
| BooleanOptionKey const | rot_anl::rot_anl ("rot_anl") |
| StringOptionKey const | rot_anl::tag ("rot_anl:tag") |
| BooleanOptionKey const | rot_anl::min ("rot_anl:min") |
| BooleanOptionKey const | rot_anl::repack ("rot_anl:repack") |
| BooleanOptionKey const | rot_anl::rtmin ("rot_anl:rtmin") |
| BooleanOptionKey const | rot_anl::scmove ("rot_anl:scmove") |
| BooleanOptionKey const | rot_anl::design ("rot_anl:design") |
| BooleanOptionKey const | rot_anl::dump_pdb ("rot_anl:dump_pdb") |
| IntegerOptionKey const | rot_anl::nloop_scmove ("rot_anl:nloop_scmove") |
| BooleanOptionKey const | smhybrid::smhybrid ("smhybrid") |
| BooleanOptionKey const | smhybrid::add_cavities ("smhybrid:add_cavities") |
| BooleanOptionKey const | smhybrid::abinitio_design ("smhybrid:abinitio_design") |
| BooleanOptionKey const | smhybrid::fa_refine ("smhybrid:fa_refine") |
| BooleanOptionKey const | smhybrid::virtual_nterm ("smhybrid:virtual_nterm") |
| BooleanOptionKey const | smhybrid::debug ("smhybrid:debug") |
| BooleanOptionKey const | smhybrid::refine ("smhybrid:refine") |
| BooleanOptionKey const | smhybrid::centroid_all_val ("smhybrid:centroid_all_val") |
| BooleanOptionKey const | smhybrid::subsubs_attract ("smhybrid:subsubs_attract") |
| BooleanOptionKey const | smhybrid::linker_cst ("smhybrid:linker_cst") |
| BooleanOptionKey const | smhybrid::pseudosym ("smhybrid:pseudosym") |
| BooleanOptionKey const | smhybrid::design_linker ("smhybrid:design_linker") |
| BooleanOptionKey const | smhybrid::design ("smhybrid:design") |
| BooleanOptionKey const | smhybrid::restrict_design_to_interface ("smhybrid:restrict_design_to_interface") |
| BooleanOptionKey const | smhybrid::restrict_design_to_subsub_interface ("smhybrid:restrict_design_to_subsub_interface") |
| BooleanOptionKey const | smhybrid::design_hydrophobic ("smhybrid:design_hydrophobic") |
| BooleanOptionKey const | smhybrid::add_metal_at_0 ("smhybrid:add_metal_at_0") |
| IntegerOptionKey const | smhybrid::nres_mono ("smhybrid:nres_mono") |
| IntegerOptionKey const | smhybrid::abinitio_cycles ("smhybrid:abinitio_cycles") |
| IntegerOptionKey const | smhybrid::primary_subsubunit ("smhybrid:primary_subsubunit") |
| IntegerOptionKey const | smhybrid::minbb ("smhybrid:minbb") |
| IntegerOptionKey const | smhybrid::switch_concert_sub ("smhybrid:switch_concert_sub") |
| RealOptionKey const | smhybrid::temperature ("smhybrid:temperature") |
| BooleanOptionKey const | smhybrid::inter_subsub_cst ("smhybrid:inter_subsub_cst") |
| RealOptionKey const | smhybrid::rb_mag ("smhybrid:rb_mag") |
| FileOptionKey const | smhybrid::symm_def_template ("smhybrid:symm_def_template") |
| FileOptionKey const | smhybrid::symm_def_template_reduced ("smhybrid:symm_def_template_reduced") |
| IntegerVectorOptionKey const | smhybrid::attach_as_sc ("smhybrid:attach_as_sc") |
| IntegerVectorOptionKey const | smhybrid::attach_as_sc_sub ("smhybrid:attach_as_sc_sub") |
| BooleanVectorOptionKey const | smhybrid::chainbreaks ("smhybrid:chainbreaks") |
| StringVectorOptionKey const | smhybrid::design_res_files ("smhybrid:design_res_files") |
| StringVectorOptionKey const | smhybrid::fixed_res_files ("smhybrid:fixed_res_files") |
| StringVectorOptionKey const | smhybrid::frag_res_files ("smhybrid:frag_res_files") |
| StringVectorOptionKey const | smhybrid::scattach_res_files ("smhybrid:scattach_res_files") |
| StringVectorOptionKey const | smhybrid::rep_edge_files ("smhybrid:rep_edge_files") |
| StringVectorOptionKey const | smhybrid::virtual_res_files ("smhybrid:virtual_res_files") |
| StringVectorOptionKey const | smhybrid::jumpcut_files ("smhybrid:jumpcut_files") |
| StringVectorOptionKey const | smhybrid::cst_sub_files ("smhybrid:cst_sub_files") |
| StringVectorOptionKey const | smhybrid::symm_file_tag ("smhybrid:symm_file_tag") |
| StringVectorOptionKey const | smhybrid::attach_atom ("smhybrid:attach_atom") |
| StringVectorOptionKey const | smhybrid::add_res_before ("smhybrid:add_res_before") |
| StringVectorOptionKey const | smhybrid::add_res_after ("smhybrid:add_res_after") |
| StringVectorOptionKey const | smhybrid::add_ss_before ("smhybrid:add_ss_before") |
| StringVectorOptionKey const | smhybrid::add_ss_after ("smhybrid:add_ss_after") |
| StringVectorOptionKey const | smhybrid::add_atom_at_cen ("smhybrid:add_atom_at_cen") |
| StringVectorOptionKey const | smhybrid::attach_rsd ("smhybrid:attach_rsd") |
| BooleanOptionKey const | tcrmodel::tcrmodel ("tcrmodel") |
| FileOptionKey const | tcrmodel::ignore_list ("tcrmodel:ignore_list") |
| RealOptionKey const | tcrmodel::blastp_identity_cutoff ("tcrmodel:blastp_identity_cutoff") |
| RealOptionKey const | tcrmodel::template_identity_cutoff ("tcrmodel:template_identity_cutoff") |
| BooleanOptionKey const | tcrmodel::include_ab_templates ("tcrmodel:include_ab_templates") |
| BooleanOptionKey const | tcrmodel::dump_templates ("tcrmodel:dump_templates") |
| BooleanOptionKey const | tcrmodel::skip_modeling ("tcrmodel:skip_modeling") |
| StringOptionKey const | tcrmodel::ab_template_db_path ("tcrmodel:ab_template_db_path") |
| StringOptionKey const | tcrmodel::tcr_template_db_path ("tcrmodel:tcr_template_db_path") |
| BooleanOptionKey const | tcrmodel::minimize_model ("tcrmodel:minimize_model") |
| BooleanOptionKey const | tcrmodel::relax_model ("tcrmodel:relax_model") |
| BooleanOptionKey const | tcrmodel::remodel_loop_cdr3a ("tcrmodel:remodel_loop_cdr3a") |
| BooleanOptionKey const | tcrmodel::remodel_loop_cdr3b ("tcrmodel:remodel_loop_cdr3b") |
| BooleanOptionKey const | tcrmodel::remodel_tcr_cdr3a_loop ("tcrmodel:remodel_tcr_cdr3a_loop") |
| BooleanOptionKey const | tcrmodel::remodel_tcr_cdr3b_loop ("tcrmodel:remodel_tcr_cdr3b_loop") |
| BooleanOptionKey const | tcrmodel::refine_tcr_cdr3a_loop ("tcrmodel:refine_tcr_cdr3a_loop") |
| BooleanOptionKey const | tcrmodel::refine_tcr_cdr3b_loop ("tcrmodel:refine_tcr_cdr3b_loop") |
| BooleanOptionKey const | tcrmodel::remodel_tcr_cdr3_loops ("tcrmodel:remodel_tcr_cdr3_loops") |
| BooleanOptionKey const | tcrmodel::refine_tcr_cdr3_loops ("tcrmodel:refine_tcr_cdr3_loops") |
| BooleanOptionKey const | tcrmodel::refine_all_tcr_cdr_loops ("tcrmodel:refine_all_tcr_cdr_loops") |
| BooleanOptionKey const | tcrmodel::use_user_templates ("tcrmodel:use_user_templates") |
| StringOptionKey const | tcrmodel::alpha_framework_template_id ("tcrmodel:alpha_framework_template_id") |
| StringOptionKey const | tcrmodel::beta_framework_template_id ("tcrmodel:beta_framework_template_id") |
| StringOptionKey const | tcrmodel::alpha_germline_template_id ("tcrmodel:alpha_germline_template_id") |
| StringOptionKey const | tcrmodel::beta_germline_template_id ("tcrmodel:beta_germline_template_id") |
| StringOptionKey const | tcrmodel::alpha_cdr1_template_id ("tcrmodel:alpha_cdr1_template_id") |
| StringOptionKey const | tcrmodel::beta_cdr1_template_id ("tcrmodel:beta_cdr1_template_id") |
| StringOptionKey const | tcrmodel::alpha_cdr2_template_id ("tcrmodel:alpha_cdr2_template_id") |
| StringOptionKey const | tcrmodel::beta_cdr2_template_id ("tcrmodel:beta_cdr2_template_id") |
| StringOptionKey const | tcrmodel::alpha_cdr3_template_id ("tcrmodel:alpha_cdr3_template_id") |
| StringOptionKey const | tcrmodel::beta_cdr3_template_id ("tcrmodel:beta_cdr3_template_id") |
| StringOptionKey const | tcrmodel::alpha_orientation_template_id ("tcrmodel:alpha_orientation_template_id") |
| StringOptionKey const | tcrmodel::beta_orientation_template_id ("tcrmodel:beta_orientation_template_id") |
| StringOptionKey const | tcrmodel::alpha_framework_template_pdb ("tcrmodel:alpha_framework_template_pdb") |
| StringOptionKey const | tcrmodel::beta_framework_template_pdb ("tcrmodel:beta_framework_template_pdb") |
| StringOptionKey const | tcrmodel::alpha_germline_template_pdb ("tcrmodel:alpha_germline_template_pdb") |
| StringOptionKey const | tcrmodel::beta_germline_template_pdb ("tcrmodel:beta_germline_template_pdb") |
| StringOptionKey const | tcrmodel::alpha_cdr1_template_pdb ("tcrmodel:alpha_cdr1_template_pdb") |
| StringOptionKey const | tcrmodel::beta_cdr1_template_pdb ("tcrmodel:beta_cdr1_template_pdb") |
| StringOptionKey const | tcrmodel::alpha_cdr2_template_pdb ("tcrmodel:alpha_cdr2_template_pdb") |
| StringOptionKey const | tcrmodel::beta_cdr2_template_pdb ("tcrmodel:beta_cdr2_template_pdb") |
| StringOptionKey const | tcrmodel::alpha_cdr3_template_pdb ("tcrmodel:alpha_cdr3_template_pdb") |
| StringOptionKey const | tcrmodel::beta_cdr3_template_pdb ("tcrmodel:beta_cdr3_template_pdb") |
| StringOptionKey const | tcrmodel::alpha_orientation_template_pdb ("tcrmodel:alpha_orientation_template_pdb") |
| StringOptionKey const | tcrmodel::beta_orientation_template_pdb ("tcrmodel:beta_orientation_template_pdb") |
| BooleanOptionKey const | tcrmodel::use_alpha_germline_templates ("tcrmodel:use_alpha_germline_templates") |
| BooleanOptionKey const | tcrmodel::use_beta_germline_templates ("tcrmodel:use_beta_germline_templates") |
| BooleanOptionKey const | tcrmodel::assign_cdr ("tcrmodel:assign_cdr") |
| StringOptionKey const | tcrmodel::assign_cdr1a ("tcrmodel:assign_cdr1a") |
| StringOptionKey const | tcrmodel::assign_cdr2a ("tcrmodel:assign_cdr2a") |
| StringOptionKey const | tcrmodel::assign_cdr3a ("tcrmodel:assign_cdr3a") |
| StringOptionKey const | tcrmodel::assign_cdr1b ("tcrmodel:assign_cdr1b") |
| StringOptionKey const | tcrmodel::assign_cdr2b ("tcrmodel:assign_cdr2b") |
| StringOptionKey const | tcrmodel::assign_cdr3b ("tcrmodel:assign_cdr3b") |
| StringOptionKey const | tcrmodel::anarci_path ("tcrmodel:anarci_path") |
| BooleanOptionKey const | threadsc::threadsc ("threadsc") |
| StringOptionKey const | threadsc::src_chain ("threadsc:src_chain") |
| StringOptionKey const | threadsc::trg_chain ("threadsc:trg_chain") |
| IntegerOptionKey const | threadsc::src_first_resid ("threadsc:src_first_resid") |
| IntegerOptionKey const | threadsc::trg_first_resid ("threadsc:trg_first_resid") |
| IntegerOptionKey const | threadsc::nres ("threadsc:nres") |
| IntegerOptionKey const | threadsc::trg_anchor ("threadsc:trg_anchor") |
| BooleanOptionKey const | ufv::ufv ("ufv") |
| IntegerOptionKey const | ufv::left ("ufv:left") |
| IntegerOptionKey const | ufv::right ("ufv:right") |
| StringOptionKey const | ufv::ss ("ufv:ss") |
| StringOptionKey const | ufv::aa_during_build ("ufv:aa_during_build") |
| StringOptionKey const | ufv::aa_during_design_refine ("ufv:aa_during_design_refine") |
| BooleanOptionKey const | ufv::keep_junction_torsions ("ufv:keep_junction_torsions") |
| FileOptionKey const | ufv::ufv_loops ("ufv:ufv_loops") |
| BooleanOptionKey const | ufv::use_fullmer ("ufv:use_fullmer") |
| StringOptionKey const | ufv::centroid_loop_mover ("ufv:centroid_loop_mover") |
| BooleanOptionKey const | ufv::no_neighborhood_design ("ufv:no_neighborhood_design") |
| IntegerOptionKey const | ufv::dr_cycles ("ufv:dr_cycles") |
| StringOptionKey const | ufv::centroid_sfx ("ufv:centroid_sfx") |
| StringOptionKey const | ufv::centroid_sfx_patch ("ufv:centroid_sfx_patch") |
| StringOptionKey const | ufv::fullatom_sfx ("ufv:fullatom_sfx") |
| StringOptionKey const | ufv::fullatom_sfx_patch ("ufv:fullatom_sfx_patch") |
| BooleanOptionKey const | ufv::insert::insert ("ufv:insert") |
| FileOptionKey const | ufv::insert::insert_pdb ("ufv:insert:insert_pdb") |
| FileOptionKey const | ufv::insert::attached_pdb ("ufv:insert:attached_pdb") |
| StringOptionKey const | ufv::insert::connection_scheme ("ufv:insert:connection_scheme") |
| BooleanOptionKey const | willmatch::willmatch ("willmatch") |
| StringVectorOptionKey const | willmatch::write_reduced_matchset ("willmatch:write_reduced_matchset") |
| RealOptionKey const | willmatch::interface_size ("willmatch:interface_size") |
| RealOptionKey const | willmatch::max_dis_any ("willmatch:max_dis_any") |
| RealOptionKey const | willmatch::max_dis_all ("willmatch:max_dis_all") |
| RealOptionKey const | willmatch::max_dis_hb ("willmatch:max_dis_hb") |
| RealOptionKey const | willmatch::min_dis_hb ("willmatch:min_dis_hb") |
| RealOptionKey const | willmatch::max_dis_hb_colinear ("willmatch:max_dis_hb_colinear") |
| RealOptionKey const | willmatch::max_dis_metal ("willmatch:max_dis_metal") |
| RealOptionKey const | willmatch::max_ang_metal ("willmatch:max_ang_metal") |
| RealOptionKey const | willmatch::clash_dis ("willmatch:clash_dis") |
| RealOptionKey const | willmatch::c2_linker_dist ("willmatch:c2_linker_dist") |
| RealOptionKey const | willmatch::identical_match_dis ("willmatch:identical_match_dis") |
| RealOptionKey const | willmatch::chi1_increment ("willmatch:chi1_increment") |
| RealOptionKey const | willmatch::chi2_increment ("willmatch:chi2_increment") |
| RealOptionKey const | willmatch::c2_symm_increment ("willmatch:c2_symm_increment") |
| RealOptionKey const | willmatch::cb_sasa_thresh ("willmatch:cb_sasa_thresh") |
| BooleanOptionKey const | willmatch::design_interface ("willmatch:design_interface") |
| FileOptionKey const | willmatch::chilist ("willmatch:chilist") |
| FileOptionKey const | willmatch::fixed_res ("willmatch:fixed_res") |
| FileOptionKey const | willmatch::native1 ("willmatch:native1") |
| FileOptionKey const | willmatch::native2 ("willmatch:native2") |
| FileOptionKey const | willmatch::exclude_res1 ("willmatch:exclude_res1") |
| FileOptionKey const | willmatch::exclude_res2 ("willmatch:exclude_res2") |
| FileOptionKey const | willmatch::taglist ("willmatch:taglist") |
| IntegerVectorOptionKey const | willmatch::residues ("willmatch:residues") |
| BooleanOptionKey const | willmatch::symmetry_d2 ("willmatch:symmetry_d2") |
| BooleanOptionKey const | willmatch::symmetry_c2_dock ("willmatch:symmetry_c2_dock") |
| IntegerVectorOptionKey const | willmatch::splitwork ("willmatch:splitwork") |
| BooleanOptionKey const | willmatch::exclude_ala ("willmatch:exclude_ala") |
| RealOptionKey const | willmatch::match_overlap_dis ("willmatch:match_overlap_dis") |
| RealOptionKey const | willmatch::match_overlap_ang ("willmatch:match_overlap_ang") |
| IntegerVectorOptionKey const | willmatch::forbid_residues ("willmatch:forbid_residues") |
| RealVectorOptionKey const | willmatch::poi ("willmatch:poi") |
| RealOptionKey const | willmatch::poidis ("willmatch:poidis") |
| BooleanOptionKey const | willmatch::homodimer ("willmatch:homodimer") |
| RealOptionKey const | willmatch::fa_dun_thresh ("willmatch:fa_dun_thresh") |
| BooleanOptionKey const | PDB_diagnostic::PDB_diagnostic ("PDB_diagnostic") |
| BooleanOptionKey const | PDB_diagnostic::reading_only ("PDB_diagnostic:reading_only") |
| BooleanOptionKey const | PDB_diagnostic::skip_pack_and_min ("PDB_diagnostic:skip_pack_and_min") |
| BooleanOptionKey const | testing::testing ("testing") |
| BooleanOptionKey const | testing::HCF ("testing:HCF") |
| BooleanOptionKey const | testing::INTEGRATION_TEST ("testing:INTEGRATION_TEST") |
| BooleanOptionKey const | solvent_exposure::solvent_exposure ("solvent_exposure") |
| StringOptionKey const | solvent_exposure::method ("solvent_exposure:method") |
1.9.1