close_homolog_refinement.cc File Reference

#include <core/types.hh>
#include <core/chemical/AA.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/ResidueMatcher.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/chemical/ResidueTypeSelector.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/pack/pack_rotamers.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/kinematics/util.hh>
#include <core/optimization/AtomTreeMinimizer.hh>
#include <core/optimization/MinimizerOptions.hh>
#include <core/pose/Pose.hh>
#include <basic/options/util.hh>
#include <basic/options/after_opts.hh>
#include <devel/init.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <numeric/xyzVector.hh>
#include <numeric/random/random.hh>
#include <core/pack/task/ResfileReader.hh>
#include <ObjexxFCL/format.hh>
#include <utility/io/izstream.hh>
#include <utility/excn/Exceptions.hh>
#include <cstdlib>
#include <fstream>
#include <iostream>
#include <string>
#include <sstream>
#include <basic/Tracer.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/run.OptionKeys.gen.hh>
#include <basic/options/keys/casp.OptionKeys.gen.hh>
#include <core/import_pose/import_pose.hh>

Functions
bool	permutate (utility::vector1< int > &residues_to_randomize)
int	main (int argc, char *argv[])

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, utility::io::oc::cout, data, numeric::xyzVector< T >::distance(), test.T009_Exceptions::e, getline(), create_a3b_hbs::i, basic::init(), autocorrelation::iterations, create_a3b_hbs::j, create_a3b_hbs::k, extract_by_sidechain_sasa_score::l, line, basic::options::OptionKeys::dna::specificity::min_type, run::min_type(), basic::options::OptionKeys::in::file::movemap, casp::num_iterations(), out::file::o(), casp::opt_radius(), option, localrmsd::output_name, permutate(), beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, casp::refine_res(), basic::options::OptionKeys::casp::repack, casp::repack(), predPRE::resnum, casp::sc_min(), oop_conformations::scorefxn, basic::options::OptionKeys::frags::scoring::scoring, basic::options::OptionKeys::casp::sequential, casp::sequential(), basic::options::start_file(), vancomycin::task, and utility_exit_with_message.

permutate()

bool permutate

(

utility::vector1< int > &

residues_to_randomize

)

References create_a3b_hbs::i.

Referenced by main().