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Rosetta
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#include <core/scoring/ScoreFunction.hh>#include <core/scoring/ScoreFunctionFactory.hh>#include <core/pack/task/operation/TaskOperations.hh>#include <core/pack/task/TaskFactory.hh>#include <core/import_pose/import_pose.hh>#include <core/pose/Pose.hh>#include <protocols/task_operations/RestrictToInterfaceVectorOperation.hh>#include <core/pose/PDBInfo.hh>#include <core/kinematics/MoveMap.hh>#include <core/scoring/constraints/ResidueTypeConstraint.hh>#include <core/scoring/constraints/ResidueTypeLinkingConstraint.hh>#include <protocols/analysis/InterfaceAnalyzerMover.hh>#include <core/chemical/ResidueType.hh>#include <protocols/minimization_packing/MinPackMover.hh>#include <protocols/minimization_packing/PackRotamersMover.hh>#include <protocols/simple_moves/NegativePackRotamersMover.hh>#include <protocols/minimization_packing/MinMover.hh>#include <protocols/minimization_packing/TaskAwareMinMover.hh>#include <devel/init.hh>#include <protocols/protein_interface_design/design_utils.hh>#include <basic/options/keys/run.OptionKeys.gen.hh>#include <basic/options/keys/out.OptionKeys.gen.hh>#include <basic/options/keys/in.OptionKeys.gen.hh>#include <basic/options/option.hh>#include <utility/io/izstream.hh>#include <utility/json_spirit/json_spirit_reader.h>#include <protocols/jobdist/standard_mains.hh>#include <basic/Tracer.hh>#include <sstream>#include <core/conformation/Residue.hh>#include <core/scoring/Energies.hh>#include <core/scoring/ScoreType.hh>Namespaces | |
| basic | |
| Tags used to tag messeges sent by MPI functions used to decide whether a slave is requesting a new job id or flagging as job as being a bad input. | |
| basic::options | |
| basic::options::OptionKeys | |
| basic::options::OptionKeys::msd | |
Functions | |
| std::string | get_out_number (core::Size in) |
| utility::vector1< core::Size > | parse_resfile (core::pack::task::PackerTaskCOP design_task) |
| int | main (int argc, char *argv[]) |
Variables | |
| basic::options::StringVectorOptionKey | basic::options::OptionKeys::msd::positive_states ("msd:positive_states") |
| basic::options::StringVectorOptionKey | basic::options::OptionKeys::msd::negative_states ("msd:negative_states") |
| basic::options::StringOptionKey | basic::options::OptionKeys::msd::upper_chains ("msd:upper_chains") |
| basic::options::StringOptionKey | basic::options::OptionKeys::msd::lower_chains ("msd:lower_chains") |
| basic::options::StringOptionKey | basic::options::OptionKeys::msd::corr ("msd:corr") |
| static basic::Tracer | TR ("msd_pilot.main") |
| std::string get_out_number | ( | core::Size | in | ) |
References basic::options::OptionKeys::in::in.
Referenced by main().
| int main | ( | int | argc, |
| char * | argv[] | ||
| ) |
References utility::options::OptionCollection::add(), argv, comp(), pyrosetta::create_score_function, utility::options::ScalarOption_T_< K, T >::def(), erraser_analysis::diff, test.T009_Exceptions::e, create_a3b_hbs::first, get_out_number(), create_a3b_hbs::i, basic::init(), create_a3b_hbs::j, create_a3b_hbs::k, min_index(), SmotifHasher::min_score, kmeans_adaptive_kernel_density_bb_dependent_rotlib::n, basic::options::OptionKeys::msd::negative_states, local::nstruct, basic::options::OptionKeys::out::nstruct, basic::options::option, parse_resfile(), beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, basic::options::OptionKeys::mp::assembly::poses, basic::options::OptionKeys::msd::positive_states, basic::options::OptionKeys::sc::rp, legacy_score_vs_rmsd::scores, basic::options::OptionKeys::dna::specificity::soft_rep, basic::options::OptionKeys::out::suffix, basic::options::TR, basic::options::OptionKeys::inout::dbms::user, and utility_exit_with_message.
| utility::vector1< core::Size > parse_resfile | ( | core::pack::task::PackerTaskCOP | design_task | ) |
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static |
1.9.1