assemble_domains_with_saxs_jd2.cc File Reference

#include <protocols/domain_assembly/AssembleLinkerMover.hh>
#include <protocols/domain_assembly/AddAssemblyConstraints.hh>
#include <protocols/comparative_modeling/util.hh>
#include <protocols/docking/DockingProtocol.hh>
#include <protocols/docking/DockingLowRes.hh>
#include <protocols/docking/stateless/SaneDockingProtocol.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <protocols/loops/LoopMoverFactory.hh>
#include <protocols/loops/LoopMover.hh>
#include <protocols/loops/Loop.hh>
#include <protocols/loops/Loops.hh>
#include <protocols/loops/loops_main.hh>
#include <core/fragment/FragSet.hh>
#include <core/fragment/FragSet.fwd.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/Conformation.hh>
#include <core/pose/Pose.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/util.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <core/scoring/constraints/util.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <protocols/relax/FastRelax.hh>
#include <core/chemical/ChemicalManager.fwd.hh>
#include <core/scoring/func/Func.hh>
#include <core/scoring/constraints/Constraint.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <core/scoring/func/LinearPenaltyFunction.hh>
#include <core/scoring/constraints/AtomPairConstraint.hh>
#include <protocols/moves/Mover.hh>
#include <protocols/simple_moves/ScoreMover.hh>
#include <protocols/moves/CompositionMover.hh>
#include <protocols/constraint_movers/ConstraintSetMover.hh>
#include <devel/init.hh>
#include <utility/excn/Exceptions.hh>
#include <iostream>
#include <string>
#include <basic/Tracer.hh>
#include <core/types.hh>
#include <utility/vector1.hh>
#include <basic/options/keys/cm.OptionKeys.gen.hh>
#include <basic/options/keys/loops.OptionKeys.gen.hh>
#include <basic/options/keys/constraints.OptionKeys.gen.hh>
#include <basic/options/option.hh>
#include <core/scoring/saxs/SAXSEnergy.hh>

Functions
int	main (int argc, char *argv[])

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, pyrosetta::create_score_function, basic::options::OptionKeys::docking::docking, test.T009_Exceptions::e, basic::options::OptionKeys::dna::specificity::frag_files, basic::init(), basic::options::OptionKeys::cm::min_loop_size, cm::min_loop_size(), option, basic::options::OptionKeys::abinitio::relax, test.Workshop4test::score3, oop_conformations::scorefxn, basic::options::OptionKeys::frags::scoring::scoring, and basic::options::OptionKeys::inout::dbms::user.