Directory dependency graph for vmullig:
Files | |
| file | bettercluster.cc |
| file | cycpep_analysis.cc |
| Simple analysis of N-to-C cyclic peptides. | |
| file | design_cycpeptide_MPI.cc |
| file | design_truecycpeptide_fromstub.cc |
| file | fit_helixparams.cc |
| Constructs a piece of secondary structure with repeating mainchain torsion values, and fits the Crick parameters for a helix to the structure. | |
| file | make_betahelicalbundle.cc |
| file | make_helicalbundle.cc |
| file | make_ideal_betapeptide.cc |
| file | make_mainchain_potential.cc |
| An app to make a mainchain potential, using MM or QM methods, for an NCAA with an already-generated sidechain potential (Dunbrack library). | |
| file | make_truecyclicpeptide.cc |
| file | PCA_internal_test.cc |
| file | PCA_visualizer.cc |
| file | plot_scoreterm.cc |
| Plot a given score term as a function to two degrees of freedom for an arbitrary residue type. | |
| file | symmetrize_3d_ramamap.cc |
| Takes a Ramachandran-style data file as input, and spits out a symmetric version (symmetrized by copying the negative phi region of Ramachandran space). | |
| file | symmetrize_new_ramamap.cc |
| Takes a Ramachandran-style data file as input, and spits out a symmetric version (symmetrized by copying the negative phi region of Ramachandran space). | |
| file | symmetrize_old_ramamap.cc |
| Takes a Ramachandran-style data file as input, and spits out a symmetric version (symmetrized by copying the negative phi region of Ramachandran space). | |
| file | symmetrize_rotlib.cc |
| An app that takes a rotamer library that should be symmetric (e.g. a peptoid rotamer library) and generates a symmetrized version. | |
| file | tensorflow_test1.cc |
| Copied verbatim from the Tensorflow website. This is intended to be a quick test of whether we're properly linking the Tensorflow libraries. | |
| file | test_cyclic_rama.cc |
| file | test_D_scoring.cc |
| file | test_KIC_betapeptide.cc |
| file | test_makebundle_mover.cc |
| A test of the mover that makes a helix in a helical bundle. | |
| file | test_makebundlehelix_mover.cc |
| A test of the mover that makes a helix in a helical bundle. | |
| file | test_metalloproteins.cc |
| file | test_multithreaded_ig_correctness.cc |
| A cxx11thread application that tests that multithreaded interaction graph computation yields an identical interaction graph to that produced by the single-threaded interaction graph computation. | |
| file | test_multithreaded_packing_performance.cc |
| An app to test the multithreaded performance of the packer. | |
| file | test_multithreaded_pdb_load.cc |
| A pilot app to test the creation of several poses at once (without first initializing anything by having a single thread initialize the pose). | |
| file | test_multithreaded_ramapp_load.cc |
| A pilot app to test the load of RamaPrePro data when many threads are trying to do this at once. | |
| file | test_pose_copy.cc |
| file | test_rosetta_thread_manager_advanced_API.cc |
| An application to test the Rosetta thread manager. This application carries out three levels of requests for threads. Depending on the number of threads launched and the options provided, some might not be possible to field, resulting in the thread manager assigning work to fewer threads than requested. | |
| file | test_rosetta_thread_manager_basic_API.cc |
| An application to test the RosettaThreadManager's default API, which accepts a vector of work. | |
| file | test_sidechainKIC.cc |
| file | test_tensorflow_graph_convolutional_nn.cc |
| A pilot app that tests the ability to load and evaluate a graph convolutional neural network made with Tensorflow within Rosetta. | |
| file | test_trRosetta.cc |
| An integration test (with pass/fail functionality) to ensure that trRosetta is properly integrated into Rosetta. | |
| file | test_trRosettaConstraintGenerator.cc |
| A unit test (albeit one in the integration test suite) for the trRosettaConstraintGenerator. This compares the constraints generated by the C++ ConstraintGenerator to known outputs from the original Python version of trRosetta. | |
| file | test_trRosettaProtocolMover.cc |
| A unit test (albeit one in the integration test suite) for the trRosettaProtocolMover. This mainly tests that the native pose is set properly and retained when the mover is cloned. | |
