test_sidechainKIC.cc File Reference

#include <basic/options/option.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/relax.OptionKeys.gen.hh>
#include <basic/options/option_macros.hh>
#include <basic/Tracer.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/Conformation.hh>
#include <devel/init.hh>
#include <core/pack/pack_rotamers.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/operation/TaskOperations.hh>
#include <core/import_pose/import_pose.hh>
#include <core/scoring/hbonds/HBondSet.hh>
#include <core/scoring/hbonds/hbonds.hh>
#include <core/conformation/util.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/rms_util.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/sequence/util.hh>
#include <core/sequence/Sequence.hh>
#include <numeric/xyz.functions.hh>
#include <numeric/xyz.io.hh>
#include <ObjexxFCL/FArray2D.hh>
#include <ObjexxFCL/format.hh>
#include <ObjexxFCL/string.functions.hh>
#include <core/scoring/dssp/Dssp.hh>
#include <sstream>
#include <utility/io/izstream.hh>
#include <utility/io/ozstream.hh>
#include <stdio.h>
#include <protocols/simple_moves/MutateResidue.hh>
#include <protocols/relax/FastRelax.fwd.hh>
#include <protocols/relax/FastRelax.hh>
#include <core/kinematics/MoveMap.hh>
#include <protocols/minimization_packing/MinMover.hh>
#include <protocols/minimization_packing/RepackSidechainsMover.hh>
#include <protocols/simple_moves/chiral/ChiralMover.hh>
#include <numeric/random/random.hh>
#include <numeric/random/uniform.hh>
#include <protocols/generalized_kinematic_closure/GeneralizedKIC.hh>
#include <protocols/generalized_kinematic_closure/perturber/GeneralizedKICperturber.hh>
#include <core/optimization/MinimizerOptions.hh>
#include <core/optimization/CartesianMinimizer.hh>
#include <core/scoring/func/HarmonicFunc.hh>
#include <core/scoring/func/CircularHarmonicFunc.hh>
#include <core/scoring/constraints/AtomPairConstraint.hh>
#include <core/scoring/constraints/AngleConstraint.hh>
#include <core/scoring/constraints/DihedralConstraint.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/pose/annotated_sequence.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/optimization/AtomTreeMinimizer.hh>
#include <protocols/loops/loop_closure/kinematic_closure/KinematicMover.hh>
#include <protocols/loops/loop_closure/kinematic_closure/KinematicWrapper.hh>
#include <core/id/NamedAtomID.hh>

Macros
#define	PI   3.1415926535897932384626433832795

Functions
void	register_options ()
int	main (int argc, char *argv[])

Macro Definition Documentation

PI

#define PI   3.1415926535897932384626433832795

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, basic::options::OptionKeys::constraints::constraints, demo.D060_Folding::counter, utility::options::OptionKeys::options::exit, lactamize::filename, create_a3b_hbs::i, basic::init(), basic::options::option, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, printf(), register_options(), in::file::s(), basic::options::OptionKeys::frags::scoring::scoring, test.T120_core::sfxn, build::stdout, and basic::options::OptionKeys::inout::dbms::user.

register_options()

void register_options

(

)

References NEW_OPT.

Referenced by main().