GlycanDockProtocol.cc File Reference

Local docking refinement of an oligomeric glycoligand in a binding site. More...

#include <protocols/glycan_docking/GlycanDockProtocol.hh>
#include <protocols/glycan_docking/GlycanDockProtocolCreator.hh>
#include <protocols/glycan_docking/util.hh>
#include <protocols/constraint_movers/ConstraintSetMover.hh>
#include <protocols/minimization_packing/MinMover.hh>
#include <protocols/moves/MonteCarlo.hh>
#include <protocols/moves/Mover.hh>
#include <protocols/moves/MoverContainer.hh>
#include <protocols/analysis/InterfaceAnalyzerMover.hh>
#include <protocols/carbohydrates/RingPlaneFlipMover.hh>
#include <protocols/docking/DockingInitialPerturbation.hh>
#include <protocols/docking/metrics.hh>
#include <protocols/docking/util.hh>
#include <protocols/rigid/RigidBodyMover.hh>
#include <core/simple_metrics/metrics/SelectedResiduesPyMOLMetric.hh>
#include <protocols/simple_moves/BackboneMover.hh>
#include <protocols/simple_moves/BBDihedralSamplerMover.hh>
#include <protocols/minimization_packing/PackRotamersMover.hh>
#include <protocols/minimization_packing/RotamerTrialsMover.hh>
#include <core/scoring/constraints/util.hh>
#include <core/scoring/rms_util.hh>
#include <core/scoring/rms_util.tmpl.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/ScoreType.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/kinematics/MoveMap.fwd.hh>
#include <core/pose/Pose.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/extra_pose_info_util.hh>
#include <core/import_pose/import_pose.hh>
#include <core/types.hh>
#include <core/select/util.hh>
#include <core/select/residue_selector/ChainSelector.hh>
#include <core/select/residue_selector/FalseResidueSelector.hh>
#include <core/select/residue_selector/util.hh>
#include <protocols/residue_selectors/HBondSelector.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <basic/options/keys/carbohydrates.OptionKeys.gen.hh>
#include <basic/options/keys/docking.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <basic/options/keys/constraints.OptionKeys.gen.hh>
#include <basic/options/keys/rings.OptionKeys.gen.hh>
#include <basic/options/keys/run.OptionKeys.gen.hh>
#include <numeric/random/random.hh>
#include <utility/excn/Exceptions.hh>
#include <utility/pointer/owning_ptr.hh>
#include <utility/string_util.hh>
#include <utility/vector1.hh>
#include <basic/Tracer.hh>
#include <utility/tag/Tag.hh>
#include <utility/tag/XMLSchemaGeneration.hh>
#include <protocols/moves/mover_schemas.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/pack/task/PackerTask.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::glycan_docking

Functions
static basic::Tracer	TR ("protocols.glycan_docking.GlycanDockProtocol")
std::ostream &	protocols::glycan_docking::operator<< (std::ostream &os, GlycanDockProtocol const &mover)

Detailed Description

Local docking refinement of an oligomeric glycoligand in a binding site.

Author

Morgan Nance (morga.nosp@m.nlna.nosp@m.nce@g.nosp@m.mail.nosp@m..com) Replaces dock_glycans app by Jason Labonte (JWLab.nosp@m.onte.nosp@m.@jhu..nosp@m.edu)

Function Documentation

TR()

static basic::Tracer TR ( "protocols.glycan_docking.GlycanDockProtocol"  )

static