Conformation.cc File Reference

Method definitions for the Conformation class. More...

#include <core/conformation/Conformation.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/PseudoBond.hh>
#include <core/conformation/util.hh>
#include <core/conformation/find_neighbors.hh>
#include <core/conformation/PointGraph.fwd.hh>
#include <core/conformation/PointGraphData.hh>
#include <core/conformation/signals/ConnectionEvent.hh>
#include <core/conformation/signals/GeneralEvent.hh>
#include <core/conformation/signals/IdentityEvent.hh>
#include <core/conformation/signals/LengthEvent.hh>
#include <core/conformation/signals/XYZEvent.hh>
#include <core/conformation/carbohydrates/util.hh>
#include <core/conformation/carbohydrates/GlycanTreeSetObserver.hh>
#include <core/conformation/membrane/MembraneInfo.hh>
#include <core/conformation/membrane/MembraneParams.hh>
#include <core/conformation/parametric/ParametersSet.hh>
#include <core/conformation/parametric/Parameters.hh>
#include <core/id/AtomID_Map.hh>
#include <core/id/TorsionID.hh>
#include <core/id/NamedAtomID.hh>
#include <core/id/PartialAtomID.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/kinematics/tree/Atom.hh>
#include <core/kinematics/AtomTree.hh>
#include <core/kinematics/constants.hh>
#include <core/chemical/ResidueConnection.hh>
#include <core/chemical/PoseResidueTypeSet.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/chemical/ResidueType.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/VariantType.hh>
#include <core/chemical/ChemicalManager.fwd.hh>
#include <core/chemical/carbohydrates/CarbohydrateInfo.hh>
#include <numeric/constants.hh>
#include <numeric/xyz.functions.hh>
#include <numeric/random/random.fwd.hh>
#include <basic/Tracer.hh>
#include <basic/prof.hh>
#include <basic/basic.hh>
#include <basic/datacache/BasicDataCache.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <utility/exit.hh>
#include <utility/pointer/owning_ptr.hh>
#include <utility/vector1.hh>
#include <utility/graph/UpperEdgeGraph.hh>
#include <ObjexxFCL/format.hh>
#include <ObjexxFCL/string.functions.hh>
#include <algorithm>
#include <utility/assert.hh>
#include <set>

Namespaces
	core
	A class for reading in the atom type properties.
	core::conformation

Functions
static basic::Tracer	TR ("core.conformation.Conformation")
std::ostream &	core::conformation::operator<< (std::ostream &os, Conformation const &conf)

Detailed Description

Method definitions for the Conformation class.

Author

Phil Bradley

Modified by Vikram K. Mulligan (vmull.nosp@m.ig@u.nosp@m.w.edu) to try to start to remove the assumption that all polymer connections are to the i+1 and i-1 residues.

Function Documentation

TR()

static basic::Tracer TR ( "core.conformation.Conformation"  )

static

Note: Don't use get_self_weak_ptr() here for Events as it causes seg faults, double free corruption or just won't compile with std:: pointers (can't use shared_from_this() in c'tor and d'tor).