FragmentChunkCrms.cc File Reference

#include <protocols/frag_picker/scores/FragmentChunkCrms.hh>
#include <protocols/frag_picker/VallResidue.hh>
#include <protocols/frag_picker/scores/FragmentScoreMap.hh>
#include <protocols/frag_picker/FragmentCandidate.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <core/conformation/Residue.hh>
#include <basic/Tracer.hh>
#include <numeric/model_quality/rms.hh>
#include <ObjexxFCL/FArray2D.hh>
#include <ObjexxFCL/FArray1D.hh>
#include <core/id/NamedAtomID.hh>
#include <core/import_pose/import_pose.hh>
#include <core/pose/Pose.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/pose/annotated_sequence.hh>
#include <iostream>
#include <string>
#include <core/sequence/SequenceAlignment.hh>
#include <core/sequence/Sequence.hh>
#include <core/sequence/NWAligner.hh>
#include <core/id/SequenceMapping.hh>
#include <core/sequence/ScoringScheme.fwd.hh>
#include <core/sequence/SimpleScoringScheme.hh>
#include <protocols/frag_picker/FragmentPicker.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::frag_picker
	protocols::frag_picker::scores

Functions
static basic::Tracer	protocols::frag_picker::scores::trTmScore ("protocols.frag_picker.scores.FragmentChunkCrms")
void	protocols::frag_picker::scores::sequencealign (core::sequence::SequenceOP seq1, core::sequence::SequenceOP seq2, FArray1D_int &seqmapping)