pose_utility.cc File Reference

#include <ndarray.h>
#include <utility/exit.hh>
#include <boost/format.hpp>
#include <boost/range/combine.hpp>
#include <protocols/indexed_structure_store/Datatypes.hh>
#include <protocols/indexed_structure_store/vector_tools.hh>
#include <protocols/indexed_structure_store/pose_utility.hh>
#include <core/chemical/AA.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/conformation/util.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/annotated_sequence.hh>
#include <core/conformation/Conformation.hh>
#include <core/id/types.hh>
#include <basic/Tracer.hh>
#include <boost/range/adaptor/indexed.hpp>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::indexed_structure_store

Functions
static basic::Tracer	TR ("core.indexed_structure_store.pose_utility")
ResidueEntry	protocols::indexed_structure_store::extract_residue_entry (core::conformation::Residue const &res)
ndarray::Array< ResidueEntry, 1 >	protocols::indexed_structure_store::extract_residue_entries (core::pose::Pose const &pose, bool ignore_non_protein)
void	protocols::indexed_structure_store::apply_residue_entries_to_pose (ndarray::Array< ResidueEntry, 1 > residue_entries, core::pose::Pose &pose, core::Size start_residue, bool apply_bb, bool apply_sidechain, bool apply_orient)
core::pose::PoseOP	protocols::indexed_structure_store::residue_entries_to_pose (ndarray::Array< protocols::indexed_structure_store::ResidueEntry, 1 > residue_entries, std::string residue_type, bool auto_termini)
template<typename Range >
std::string	protocols::indexed_structure_store::to_str (Range range)
template<typename Range , typename Op >
std::vector< size_t >	protocols::indexed_structure_store::index_if (Range const &r, Op &pred)
core::pose::PoseOP	protocols::indexed_structure_store::initial_pose_for_residues (ndarray::Array< protocols::indexed_structure_store::ResidueEntry, 1 > residue_entries, std::string residue_type, bool auto_termini)

Function Documentation

TR()

static basic::Tracer TR ( "core.indexed_structure_store.pose_utility"  )

static

Author

Alex Ford (forda.nosp@m.s@uw.nosp@m..edu)