AlignmentEnergy.cc File Reference

An RMSD-type energy to a reference pose, complete with derivatives hacked out of coordinate constraints. More...

#include <protocols/rna/AlignmentEnergy.hh>
#include <protocols/rna/AlignmentEnergyCreator.hh>
#include <protocols/stepwise/modeler/align/StepWisePoseAligner.hh>
#include <protocols/stepwise/modeler/util.hh>
#include <core/scoring/methods/WholeStructureEnergy.hh>
#include <core/scoring/func/FlatHarmonicFunc.hh>
#include <core/scoring/func/HarmonicFunc.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreType.hh>
#include <core/scoring/rms_util.hh>
#include <core/pose/full_model_info/util.hh>
#include <core/conformation/Residue.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/id/AtomID.hh>
#include <core/pose/Pose.hh>
#include <core/import_pose/import_pose.hh>
#include <numeric/xyzVector.hh>
#include <core/scoring/EnergyMap.hh>
#include <utility/vector1.hh>
#include <core/types.hh>
#include <basic/Tracer.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/stepwise.OptionKeys.gen.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <utility/stream_util.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::rna

Functions
static basic::Tracer	TR ("protocols.rna.AlignmentEnergy")

Detailed Description

An RMSD-type energy to a reference pose, complete with derivatives hacked out of coordinate constraints.

Author

Andy Watkins (amw57.nosp@m.9@ny.nosp@m.u.edu)

Function Documentation

TR()

static basic::Tracer TR ( "protocols.rna.AlignmentEnergy"  )

static