FragmentExtension.cc File Reference

#include <protocols/loop_grower/FragmentExtensionCreator.hh>
#include <protocols/loop_grower/FragmentExtension.hh>
#include <protocols/loop_grower/LoopGrower.hh>
#include <fstream>
#include <protocols/hybridization/util.hh>
#include <protocols/moves/Mover.fwd.hh>
#include <protocols/simple_moves/SwitchResidueTypeSetMover.hh>
#include <protocols/simple_moves/ReturnSidechainMover.hh>
#include <basic/datacache/DataMap.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/Energies.hh>
#include <core/sequence/util.hh>
#include <core/sequence/Sequence.hh>
#include <core/sequence/SWAligner.hh>
#include <core/sequence/ScoringScheme.fwd.hh>
#include <core/sequence/SimpleScoringScheme.hh>
#include <core/sequence/SequenceAlignment.hh>
#include <core/pose/Pose.hh>
#include <core/pose/PDBInfo.hh>
#include <core/chemical/ChemicalManager.fwd.hh>
#include <core/chemical/VariantType.hh>
#include <core/import_pose/import_pose.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/pose/annotated_sequence.hh>
#include <core/id/AtomID.hh>
#include <core/pose/variant_util.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/EnergyGraph.hh>
#include <core/conformation/util.hh>
#include <core/fragment/FragmentIO.hh>
#include <core/fragment/FragSet.hh>
#include <core/fragment/Frame.hh>
#include <core/fragment/FrameIterator.hh>
#include <core/fragment/FragData.hh>
#include <core/fragment/BBTorsionSRFD.hh>
#include <core/pose/symmetry/util.hh>
#include <utility/graph/Graph.hh>
#include <numeric/random/random.hh>
#include <numeric/random/random_permutation.hh>
#include <numeric/xyzVector.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/citation_manager/CitationCollection.hh>
#include <basic/citation_manager/CitationManager.hh>
#include <utility/tag/Tag.hh>
#include <utility/string_util.hh>
#include <basic/Tracer.hh>
#include <utility/tag/XMLSchemaGeneration.hh>
#include <protocols/moves/mover_schemas.hh>
#include <core/conformation/Conformation.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::loop_grower

Functions
static basic::Tracer	protocols::loop_grower::TR ("protocols.loop_grower.FragmentExtension")
std::string	protocols::loop_grower::fragext_subelement_ct_name (std::string const &name)

Detailed Description

Author

Brandon Frenz

Frank DiMaio