AntibodyDesignMover.cc File Reference

Class that initially designs antibodies through grafting using an AntibodyDatabase + North_AHO numbering scheme. More...

#include <protocols/antibody/design/AntibodyDesignMover.hh>
#include <protocols/antibody/design/AntibodyDesignMoverCreator.hh>
#include <protocols/antibody/clusters/CDRClusterEnum.hh>
#include <protocols/antibody/clusters/CDRClusterSet.hh>
#include <protocols/antibody/clusters/util.hh>
#include <protocols/antibody/AntibodyInfo.hh>
#include <protocols/antibody/AntibodyEnum.hh>
#include <protocols/antibody/util.hh>
#include <protocols/antibody/constraints/ParatopeSiteConstraintMover.hh>
#include <protocols/antibody/constraints/ParatopeEpitopeSiteConstraintMover.hh>
#include <protocols/antibody/constraints/CDRDihedralConstraintMover.hh>
#include <protocols/antibody/database/AntibodyDatabaseManager.hh>
#include <protocols/antibody/design/GeneralAntibodyModeler.hh>
#include <protocols/antibody/design/AntibodySeqDesignTFCreator.hh>
#include <protocols/antibody/design/MutateFrameworkForCluster.hh>
#include <protocols/antibody/design/util.hh>
#include <protocols/antibody/design/AntibodyDesignEnumManager.hh>
#include <protocols/antibody/design/NativeAntibodySeq.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/pose/Pose.hh>
#include <core/pose/datacache/CacheableDataType.hh>
#include <basic/datacache/BasicDataCache.hh>
#include <core/optimization/MinimizerOptions.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/extra_pose_info_util.hh>
#include <protocols/jd2/util.hh>
#include <protocols/moves/MonteCarlo.hh>
#include <protocols/monte_carlo/MonteCarloInterface.hh>
#include <protocols/analysis/InterfaceAnalyzerMover.hh>
#include <protocols/simple_moves/DeleteChainsMover.hh>
#include <protocols/grafting/CCDEndsGraftMover.hh>
#include <protocols/grafting/AnchoredGraftMover.hh>
#include <protocols/docking/util.hh>
#include <protocols/loops/util.hh>
#include <protocols/loops/loops_main.hh>
#include <protocols/simple_task_operations/RestrictToInterface.hh>
#include <numeric/random/random.hh>
#include <numeric/random/WeightedSampler.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/antibody.OptionKeys.gen.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <basic/citation_manager/CitationCollection.hh>
#include <basic/citation_manager/CitationManager.hh>
#include <basic/Tracer.hh>
#include <map>
#include <iterator>
#include <utility/string_util.hh>
#include <utility/tag/Tag.hh>
#include <utility/tag/XMLSchemaGeneration.hh>
#include <protocols/moves/mover_schemas.hh>
#include <utility/stream_util.hh>
#include <protocols/antibody/clusters/CDRCluster.hh>
#include <protocols/minimization_packing/MinMover.hh>
#include <core/pack/task/TaskFactory.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::antibody
	protocols::antibody::design

Functions
static basic::Tracer	TR ("protocols.antibody.design.AntibodyDesignMover")

Detailed Description

Class that initially designs antibodies through grafting using an AntibodyDatabase + North_AHO numbering scheme.

Author

Jared Adolf-Bryfogle (jadol.nosp@m.fbr@.nosp@m.gmail.nosp@m..com)

Function Documentation

TR()

static basic::Tracer TR ( "protocols.antibody.design.AntibodyDesignMover"  )

static