FastDesign.cc File Reference

Similar to FastRelax, but with design and a few additional options. More...

#include <protocols/denovo_design/movers/FastDesign.hh>
#include <protocols/denovo_design/movers/FastDesignCreator.hh>
#include <protocols/constraint_generator/AddConstraints.hh>
#include <protocols/constraint_generator/ConstraintGenerator.hh>
#include <protocols/constraint_generator/RemoveConstraints.hh>
#include <protocols/simple_moves/MutateResidue.hh>
#include <protocols/task_operations/LimitAromaChi2Operation.hh>
#include <core/conformation/Residue.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/pack/task/operation/TaskOperations.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pose/Pose.hh>
#include <basic/options/keys/relax.OptionKeys.gen.hh>
#include <basic/options/keys/packing.OptionKeys.gen.hh>
#include <basic/options/option.hh>
#include <basic/Tracer.hh>
#include <basic/citation_manager/CitationManager.hh>
#include <basic/citation_manager/CitationCollection.hh>
#include <utility/tag/Tag.hh>
#include <utility/pointer/memory.hh>
#include <utility/tag/XMLSchemaGeneration.hh>
#include <basic/datacache/DataMap.hh>
#include <core/pack/task/PackerTask.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::denovo_design
	protocols::denovo_design::movers

Functions
static basic::Tracer	TR ("protocols.denovo_design.movers.FastDesign")

Detailed Description

Similar to FastRelax, but with design and a few additional options.

Carries out alternating rounds of design (packing) and minimization, ramping up the repulsive term from a very low value from one iteration to the next.

Author

Tom Linsky

Vikram K. Mulligan (vmull.nosp@m.ig@u.nosp@m.w.edu) – Added support for D-amino acids.

Function Documentation

TR()

static basic::Tracer TR ( "protocols.denovo_design.movers.FastDesign"  )

static