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Rosetta
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An operation to perform on a packer task – usually, by a PackerTaskFactory right after the task's construction This is an incomplete list. Freely define your own TaskOperation and hand it to a PackerTaskFactory. More...
#include <core/pack/task/operation/TaskOperation.hh>#include <core/pack/task/operation/TaskOperations.fwd.hh>#include <core/pose/Pose.fwd.hh>#include <core/pack/task/PackerTask.fwd.hh>#include <core/pack/task/ResfileReader.fwd.hh>#include <core/pack/rotamer_set/RotamerCouplings.fwd.hh>#include <core/pack/rotamer_set/RotamerLinks.fwd.hh>#include <core/pack/rotamer_set/RotamerSetOperation.fwd.hh>#include <core/pack/task/RotamerSampleOptions.hh>#include <core/select/residue_selector/ResidueSelector.fwd.hh>#include <core/types.hh>#include <core/chemical/ResidueProperty.hh>#include <utility/options/OptionCollection.fwd.hh>#include <utility/options/keys/OptionKeyList.fwd.hh>#include <utility/tag/Tag.fwd.hh>#include <utility/tag/XMLSchemaGeneration.fwd.hh>#include <string>#include <utility/vector1.hh>Classes | |
| class | core::pack::task::operation::RestrictToSpecifiedBaseResidueTypes |
| Restrict the palette of ResidueTypes to the base ResidueTypes provided by name. More... | |
| class | core::pack::task::operation::ProhibitSpecifiedBaseResidueTypes |
| Prohibit the base ResidueTypes provided by name from the palette of ResidueTypes. More... | |
| class | core::pack::task::operation::RestrictToResidueProperties |
| Restrict the palette of ResidueTypes to those with the given properties. More... | |
| class | core::pack::task::operation::ProhibitResidueProperties |
| Restrict the palette of ResidueTypes to those with the given properties. More... | |
| class | core::pack::task::operation::RestrictToRepacking |
| RestrictToRepacking. More... | |
| class | core::pack::task::operation::RestrictResidueToRepacking |
| RestrictResidueToRepacking. More... | |
| class | core::pack::task::operation::RestrictAbsentCanonicalAAS |
| RestrictAbsentCanonicalAAS. More... | |
| class | core::pack::task::operation::DisallowIfNonnative |
| DisallowIfNonnative allows you to define what residues are NOT allowed in packing unless that residue is present in the input. Behaves like RestrictAbsentCanonicalAAS and NOTAA except will allow a resitricted residue at a position if it is there to begin with at the time of Task creation. Will do all residues unless otherwise defined by selection syntax below. More... | |
| class | core::pack::task::operation::RotamerExplosion |
| rotamer explosion for a residue More... | |
| class | core::pack::task::operation::InitializeFromCommandline |
| class | core::pack::task::operation::UseMultiCoolAnnealer |
| class | core::pack::task::operation::InitializeFromOptionCollection |
| retrieves an OptionCollection from the DataMap. More... | |
| class | core::pack::task::operation::InitializeExtraRotsFromCommandline |
| class | core::pack::task::operation::IncludeCurrent |
| struct | core::pack::task::operation::ExtraRotamerSamplingData |
| class | core::pack::task::operation::ExtraRotamersGeneric |
| class | core::pack::task::operation::ReadResfile |
| class | core::pack::task::operation::ReadResfileAndObeyLengthEvents |
| written by flo, feb 2011 class that can apply a resfile to a pose that had its length changed at some point in a protocol. A LengthEventCollector must be set in the pose's observer cache for this to work properly More... | |
| class | core::pack::task::operation::SetRotamerCouplings |
| class | core::pack::task::operation::SetRotamerLinks |
| class | core::pack::task::operation::AppendRotamer |
| when a PackerTask is created by the Factory, the RotamerOperation will be given to it More... | |
| class | core::pack::task::operation::AppendRotamerSet |
| when a PackerTask is created by the Factory, the RotamerSetOperation will be given to it More... | |
| class | core::pack::task::operation::AppendResidueRotamerSet |
| Apply rotamerSetOperation to only the rotamerSet for the given residue. More... | |
| class | core::pack::task::operation::PreserveCBeta |
| class | core::pack::task::operation::PreventRepacking |
| PreventRepacking allows you to prevent repacking (NATRO behavior) through the Factory. Useful if you do not know the residue numbers when the resfile is created. Note that this is unlike RestrictToRepacking; you have to specify which residues. If PreventRepacking worked on the entire Task you'd have a do-nothing task. More... | |
| class | core::pack::task::operation::RestrictYSDesign |
| RestrictYSDesign restricts positions to a binary Tyr/Ser alphabet. More... | |
| class | core::pack::task::operation::ExtraRotamers |
| ExtraRotamer for a residue. You know, -ex1, -ex2, all that. More... | |
| class | core::pack::task::operation::ExtraChiCutoff |
| ExtraChiCutoff (correponding to flag "-extrachi_cutoff <float>" ) More... | |
Namespaces | |
| core | |
| A class for reading in the atom type properties. | |
| core::pack | |
| core::pack::task | |
| core::pack::task::operation | |
Functions | |
| void | core::pack::task::operation::parse_rotamer_sampling_data (utility::tag::TagCOP tag, ExtraRotamerSamplingData &sampling_data) |
| Initialize rotamer sampling data based on the options (attributes) in an input Tag. More... | |
| utility::tag::AttributeList | core::pack::task::operation::rotamer_sampling_data_xml_schema_attributes (utility::tag::XMLSchemaDefinition &xsd) |
| Return the list of XML schema attributes that are read by the parse_rotamer_sampling_data function. More... | |
| void | core::pack::task::operation::set_rotamer_sampling_data_for_RLT (ExtraRotamerSamplingData const &sampling_data, ResidueLevelTask &res_task) |
An operation to perform on a packer task – usually, by a PackerTaskFactory right after the task's construction This is an incomplete list. Freely define your own TaskOperation and hand it to a PackerTaskFactory.
1.9.1