FoldArchitectMover.cc File Reference

Mover that builds and folds a structure via fragment insertion. More...

#include <protocols/denovo_design/movers/FoldArchitectMover.hh>
#include <protocols/denovo_design/movers/FoldArchitectMoverCreator.hh>
#include <protocols/constraint_generator/AddConstraints.hh>
#include <protocols/constraint_generator/AtomPairConstraintGenerator.hh>
#include <protocols/constraint_generator/RemoveConstraints.hh>
#include <protocols/denovo_design/architects/DeNovoArchitectFactory.hh>
#include <protocols/denovo_design/architects/StrandArchitect.hh>
#include <protocols/denovo_design/components/DivideAndConqueror.hh>
#include <protocols/denovo_design/components/ExtendedPoseBuilder.hh>
#include <protocols/denovo_design/components/FoldGraph.hh>
#include <protocols/denovo_design/components/RemodelLoopMoverPoseFolder.hh>
#include <protocols/denovo_design/components/RandomTorsionPoseFolder.hh>
#include <protocols/denovo_design/components/NullPoseFolder.hh>
#include <protocols/denovo_design/components/Segment.hh>
#include <protocols/denovo_design/components/StructureData.hh>
#include <protocols/denovo_design/components/StructureDataFactory.hh>
#include <protocols/denovo_design/components/StructureDataPerturber.hh>
#include <protocols/denovo_design/movers/FoldTreeFromFoldGraphMover.hh>
#include <protocols/denovo_design/movers/SealFoldTreeMover.hh>
#include <protocols/denovo_design/util.hh>
#include <protocols/filters/CalculatorFilter.hh>
#include <protocols/fldsgn/filters/SecondaryStructureFilter.hh>
#include <protocols/loops/Loop.hh>
#include <protocols/loops/Loops.hh>
#include <protocols/moves/mover_schemas.hh>
#include <protocols/simple_moves/ReturnSidechainMover.hh>
#include <protocols/simple_moves/SwitchResidueTypeSetMover.hh>
#include <protocols/rosetta_scripts/util.hh>
#include <core/pose/Pose.hh>
#include <core/pose/variant_util.hh>
#include <core/pose/symmetry/util.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/select/residue_selector/ResidueIndexSelector.hh>
#include <basic/Tracer.hh>
#include <utility/tag/Tag.hh>
#include <fstream>
#include <ctime>
#include <utility/tag/XMLSchemaGeneration.hh>
#include <utility/stream_util.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::denovo_design
	protocols::denovo_design::movers

Functions
static basic::Tracer	TR ("protocols.denovo_design.movers.FoldArchitectMover")
std::string	protocols::denovo_design::movers::pdb_filename (core::Size const phase_num)
	given an build phase number, returns a pdb filename for checkpointing Example filename: iter_01_20160718133800.pdb More...
core::scoring::ScoreFunctionOP	protocols::denovo_design::movers::get_score_function (core::pose::Pose const &)
utility::tag::XMLSchemaSimpleSubelementList	protocols::denovo_design::movers::pre_and_post_fold_mover_subelements ()
FoldArchitectMover::ResidueVector	protocols::denovo_design::movers::add_overlap_to_loops (protocols::loops::Loops &loops, core::Size const overlap, core::pose::Pose const &pose)
	goes through loops and adds overlapping residues More...

Detailed Description

Mover that builds and folds a structure via fragment insertion.

Author

Tom Linsky (tlins.nosp@m.ky@u.nosp@m.w.edu)

Function Documentation

TR()

static basic::Tracer TR ( "protocols.denovo_design.movers.FoldArchitectMover"  )

static