PartialSecondarySimilarity.cc File Reference

scores a fragment by secondary structure similarity but throws out the worst 20% of the residue matches More...

#include <protocols/frag_picker/scores/PartialSecondarySimilarity.hh>
#include <core/types.hh>
#include <protocols/frag_picker/FragmentCandidate.hh>
#include <protocols/frag_picker/scores/FragmentScoreMap.hh>
#include <core/fragment/SecondaryStructure.hh>
#include <basic/Tracer.hh>
#include <utility/vector1.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::frag_picker
	protocols::frag_picker::scores

Functions
static basic::Tracer	protocols::frag_picker::scores::trPartialSecondarySimilarity ("protocols.frag_picker.scores.PartialSecondarySimilarity")

Detailed Description

scores a fragment by secondary structure similarity but throws out the worst 20% of the residue matches

Author

Robert Vernon (rvern.nosp@m.on@u.nosp@m..wash.nosp@m.ingt.nosp@m.on.ed.nosp@m.u)