ExtendedPoseBuilder.cc File Reference

Builds a pose using a blueprint from a structure architect. More...

#include <protocols/denovo_design/components/ExtendedPoseBuilder.hh>
#include <protocols/denovo_design/components/FoldGraph.hh>
#include <protocols/denovo_design/components/Segment.hh>
#include <protocols/denovo_design/components/StructureData.hh>
#include <protocols/denovo_design/components/StructureDataFactory.hh>
#include <protocols/denovo_design/util.hh>
#include <core/conformation/Conformation.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/pose/Pose.hh>
#include <core/pose/variant_util.hh>
#include <core/pose/util.hh>
#include <core/kinematics/FoldTree.hh>
#include <basic/Tracer.hh>
#include <utility/stream_util.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::denovo_design
	protocols::denovo_design::components

Functions
static basic::Tracer	TR ("protocols.denovo_design.components.ExtendedPoseBuilder")
std::string	protocols::denovo_design::components::create_debug_filename (std::string const &file_prefix, core::Size const index, std::string const &file_suffix)
void	protocols::denovo_design::components::add_terminus_variants (core::pose::Pose &pose, ExtendedPoseBuilder::Resids const &endings)
core::conformation::ResidueOP	protocols::denovo_design::components::rsd_op (core::pose::Pose const &pose, std::string const &res_type)
	helper function to create a ValineOP in the same typeset as the pose More...
void	protocols::denovo_design::components::append_new_chain_from_template_segment (core::pose::Pose &pose, Segment const &segment)
void	protocols::denovo_design::components::append_residues_from_template_segment (core::pose::Pose &pose, Segment const &prev_segment, Segment const &segment)
core::kinematics::FoldTree	protocols::denovo_design::components::modify_ft_for_residue_insertion (core::pose::Pose &pose, core::Size const safe_res)
	modifies teh ft in the pose, returns the original More...
void	protocols::denovo_design::components::set_dihedrals (core::pose::Pose &pose, core::Size const resid, ResidueDihedrals const &dihedrals)
void	protocols::denovo_design::components::prepend_new_residues (core::pose::Pose &pose, core::Size num_residues, core::Size insert_pos, core::Size const, std::string const &type, ResidueDihedrals const &lower_dihedrals)
void	protocols::denovo_design::components::append_new_residues (core::pose::Pose &pose, core::Size num_residues, core::Size insert_pos, core::Size const, std::string const &type, ResidueDihedrals const &upper_dihedrals)

Detailed Description

Builds a pose using a blueprint from a structure architect.

Author

Tom Linsky (tlins.nosp@m.ky@u.nosp@m.w.edu)

Function Documentation

TR()

static basic::Tracer TR ( "protocols.denovo_design.components.ExtendedPoseBuilder"  )

static