Here is a list of all class members with links to the classes they belong to:

- s -

• s : basic::sampling::orientations::QuaternionGrid , utility::py::Value
• s1_ : ObjexxFCL::FArray2< typename > , ObjexxFCL::FArray3< typename > , ObjexxFCL::FArray4< typename > , ObjexxFCL::FArray5< typename > , ObjexxFCL::FArray6< typename >
• s2_ : ObjexxFCL::FArray3< typename > , ObjexxFCL::FArray4< typename > , ObjexxFCL::FArray5< typename > , ObjexxFCL::FArray6< typename >
• s2d() : utility::subset_mapping
• s3_ : ObjexxFCL::FArray4< typename > , ObjexxFCL::FArray5< typename > , ObjexxFCL::FArray6< typename >
• s4_ : ObjexxFCL::FArray5< typename > , ObjexxFCL::FArray6< typename >
• s5_ : ObjexxFCL::FArray6< typename >
• s_ : Base , utility::py::Value
• safe_output() : basic::TracerImpl
• same_dimensions() : numeric::MathMatrix< T >
• same_edge() : utility::graph::DirectedEdge , utility::graph::Edge , utility::graph::LowMemEdge
• same_type_as_me() : numeric::interpolation::spline::CompoundInterpolator , numeric::interpolation::spline::Interpolator , numeric::interpolation::spline::SimpleInterpolator
• sample() : numeric::random::DistributionSampler< T >
• samples() : numeric::random::WeightedReservoirSampler< T >
• sampling_increment_ : zinc_stats::ZincStatisticGenerator
• sampling_range_ : zinc_stats::ZincStatisticGenerator
• sampLoc() : numeric::fourier::SO3coeffs
• sanity_check() : numeric::geometry::hashing::xyzStripeHash , numeric::geometry::hashing::xyzStripeHashWithMeta< T >
• sarray_ : ObjexxFCL::FArray< typename >
• sat_allow_ : ExposedStrandMover
• save() : numeric::VoxelArray< _Float, _Value >
• saveState() : numeric::random::mt19937_RG , numeric::random::RandomGenerator , numeric::random::standard_RG , numeric::random::uniform_RG
• sc_bb_min_mover_ : zinc1_homodimer_design
• sc_bb_move_map_ : zinc1_homodimer_design
• sc_min_mover_ : zinc1_homodimer_design
• sc_move_map_ : zinc1_homodimer_design
• scaffold : APDBCMover
• Scalar : numeric::linear_algebra::GeneralizedEigenSolver< _MatrixType >
• scalar() : utility::options::OptionKey , utility::options::ScalarOptionKey , utility::options::VectorOptionKey
• ScalarOption() : utility::options::ScalarOption
• ScalarOption_T_() : utility::options::ScalarOption_T_< K, T >
• ScalarOptionKey() : utility::options::ScalarOptionKey
• scale_diag : numeric::nls::lm_control_struct
• scaled_add() : numeric::sphericalVector< typename > , numeric::xyzTriple< typename > , numeric::xyzVector< typename >
• scaled_assign() : numeric::sphericalVector< typename > , numeric::xyzTriple< typename > , numeric::xyzVector< typename >
• scaled_sub() : numeric::sphericalVector< typename > , numeric::xyzTriple< typename > , numeric::xyzVector< typename >
• scan() : numeric::expression_parser::ArithmeticScanner
• scan_identifier() : numeric::expression_parser::ArithmeticScanner
• scan_literal() : numeric::expression_parser::ArithmeticScanner
• Schema() : basic::database::schema_generator::Schema
• schema_ : utility::tag::XMLValidatorImpl
• schema_for_resource_definition_file() : basic::resource_manager::ResourceManager
• schema_has_been_set() : utility::tag::XMLValidator , utility::tag::XMLValidatorImpl
• schema_has_been_set_ : utility::tag::XMLValidatorImpl
• schema_parser_context_ : utility::tag::XMLValidatorImpl
• schema_validator_ : utility::tag::XMLValidatorImpl
• score() : FragmentAssemblyMover , numeric::RocPoint
• score_ : numeric::RocPoint
• score_function() : DockGlycansProtocol , pyrosetta.distributed.tasks.score.ScorePoseTask
• score_function_ : Minimize , NCMinimize
• score_type_ : ScoreEachBenchmark
• score_types_for_method() : test.T850_SubClassing.MyNewCI1B_Creator
• ScoreAnalyticEtableBenchmark() : ScoreAnalyticEtableBenchmark
• ScoreBenchmark() : ScoreBenchmark
• ScoreEachBenchmark() : ScoreEachBenchmark
• ScoreFragInfo() : ScoreFragInfo
• ScoreFragmentSetMover() : ScoreFragmentSetMover
• scorefunction_ : zinc2_homodimer_setup
• scorefxn() : ExtractATD , MinimizerBenchmark< sft, TScale > , pyrosetta.toolbox.py_jobdistributor.PyJobDistributor
• scorefxn_ : BacksideHbondFinderMover , ExposedStrandMover , ExtractATD , FastRelaxPerformanceBenchmark , HDdesignMover , HDmakerMover , IAMover , InteractionGraphPerformanceBenchmark , ScoreEachBenchmark , supercharge
• scorefxn_a : HDdesignMover
• scorefxn_cst_ : CaToAllAtom
• scoreName : pyrosetta.EnergyMethod
• scores : pyrosetta.distributed.packed_pose.core.PackedPose
• scores_1b : FragmentAssemblyMover
• scores_2b : FragmentAssemblyMover
• scoreType : pyrosetta.EnergyMethod
• scoring_file : erraser_option.erraser_option
• ScratchMatrix : numeric::linear_algebra::GeneralizedEigenSolver< _MatrixType >
• ScratchVector : numeric::linear_algebra::GeneralizedEigenSolver< _MatrixType >
• sd : pep_coord_cst
• sdata : pyrosetta.io.silent_file_map.SilentFileEnergyAccessor , pyrosetta.io.silent_file_map.SilentFileMap , pyrosetta.io.silent_file_map.SilentFilePoseAccessor
• search_paths_ : basic::resource_manager::locator::FileSystemResourceLocator
• search_syn_pyrimidine_only_when_native_syn : erraser_option.erraser_option
• second_node_ind_ : utility::graph::LowMemEdge
• secondary_structs_ : apps::pilot::frankdt::Motif
• SecondaryStruct() : apps::pilot::frankdt::SecondaryStruct
• seconds : pyrosetta.distributed.utility.log.ProgressLogger
• Section : ObjexxFCL::FArray1< typename > , ObjexxFCL::FArray1A< typename > , ObjexxFCL::FArray1D< typename > , ObjexxFCL::FArray1P< typename > , ObjexxFCL::FArray2< typename > , ObjexxFCL::FArray2A< typename > , ObjexxFCL::FArray2D< typename > , ObjexxFCL::FArray2P< typename > , ObjexxFCL::FArray3< typename > , ObjexxFCL::FArray3A< typename > , ObjexxFCL::FArray3D< typename > , ObjexxFCL::FArray3P< typename > , ObjexxFCL::FArray4< typename > , ObjexxFCL::FArray4A< typename > , ObjexxFCL::FArray4D< typename > , ObjexxFCL::FArray4P< typename > , ObjexxFCL::FArray5< typename > , ObjexxFCL::FArray5A< typename > , ObjexxFCL::FArray5D< typename > , ObjexxFCL::FArray5P< typename > , ObjexxFCL::FArray6< typename > , ObjexxFCL::FArray6A< typename > , ObjexxFCL::FArray6D< typename > , ObjexxFCL::FArray6P< typename > , ObjexxFCL::FArray< typename > , ObjexxFCL::KeyFArray1D< typename > , ObjexxFCL::KeyFArray2D< typename > , ObjexxFCL::KeyFArray3D< typename > , ObjexxFCL::KeyFArray4D< typename > , ObjexxFCL::KeyFArray5D< typename > , ObjexxFCL::KeyFArray6D< typename >
• seed_ : numeric::random::standard_RG
• seek_beg() : utility::io::icstream , utility::io::irstream , utility::io::izstream
• segment_file_generator() : apps::pilot::frankdt::segment_file_generator
• select_working_set() : Solver , Solver_NU
• self_pure_test_virtual_p() : utility::py::OverloadTest
• self_pure_test_virtual_ref() : utility::py::OverloadTest
• self_test_virtual_p() : utility::py::OverloadTest
• self_test_virtual_ref() : utility::py::OverloadTest
• Semantic_actions() : utility::json_spirit::Semantic_actions< Value_type, Iter_type >
• Semantic_actions_t : utility::json_spirit::Json_grammer< Value_type, Iter_type >
• semi_constructed_expression_ : numeric::expression_parser::ExpressionCreator
• send() : utility::signals::LinkUnit , utility::signals::SignalHub< ResultType, Signal >
• send_char_to_node() : utility::SimulateMPI
• send_double_to_node() : utility::SimulateMPI
• send_doubles_to_node() : utility::SimulateMPI
• send_integer_to_node() : utility::SimulateMPI
• send_integers_to_node() : utility::SimulateMPI
• send_signal() : utility::signals::SignalHub< ResultType, Signal > , utility::signals::TokenHub< ResultType, Signal >
• send_size_to_node() : utility::SimulateMPI
• send_sizes_to_node() : utility::SimulateMPI
• send_string_to_node() : utility::SimulateMPI
• send_to_master() : utility::io::mpi_stream::basic_mpi_streambuf< Elem, Tr, ElemA, ByteT, ByteAT >
• sep : fmt::ArgJoin< Char, It >
• sep_ : fmt::internal::ThousandsSep
• sequence : pyrosetta.toolbox.py_jobdistributor.PyJobDistributor
• sequence_ : utility::CSI_Sequence
• sequences_ : MPDomainAssembly
• sequential : utility::keys::AutoKey< O, S, C > , utility::keys::UserKey< O, S, C >
• serialize() : numeric::interpolation::spline::CompoundInterpolator , numeric::interpolation::spline::Interpolator , numeric::interpolation::spline::SimpleInterpolator
• session() : utility::sql_database::session
• set() : basic::datacache::DataCache< Data > , basic::datacache::HierarchicalDataMap , basic::MetricValue< T > , basic::Report , basic::Reporter , numeric::IntervalSet< typename > , utility::DenseBoolMap< NUM_ELEMS, BASE_INDEX >
• Set : utility::keys::KeySetTraits< K >
• set_abstract() : utility::tag::XMLSchemaElement
• set_accessed() : utility::options::Option
• set_all_flags() : numeric::ClusteringTreeNode
• set_allocated() : utility::graph::NegSpaceElement< T >
• set_already_defined_element() : utility::tag::XMLSchemaRepeatableCTNode
• set_already_defined_element_w_alt_name() : utility::tag::XMLSchemaRepeatableCTNode
• set_alternative_search_paths() : utility::io::izstream
• set_array() : utility::graph::NegSpaceElement< T >
• set_array_size() : utility::graph::ArrayPool< T >
• set_atom_sasa_cutoff() : BacksideHbondFinderMover
• set_bin_width() : numeric::interpolation::InterpolatedPotential< N >
• set_block_size() : utility::graph::ArrayPool< T >
• set_chain_no() : PhProtocol
• set_char_msg() : utility::SimulateMPIMessage
• set_chunk_size() : utility::sql_database::session
• set_cl_value() : utility::options::Option , utility::options::ScalarOption , utility::options::VectorOption
• set_cmd_opts() : mutant_modeler.MutantModeler
• set_commandline_options() : DockGlycansProtocol
• set_db_mode() : utility::sql_database::session
• set_db_name() : utility::sql_database::session
• set_db_partition() : utility::sql_database::session
• set_default() : PhProtocol
• set_default_final_stream() : basic::TracerImpl
• set_diagonal() : numeric::xyzMatrix< typename > , ObjexxFCL::FArray2< typename >
• set_dimension() : numeric::MultiDimensionalHistogram
• set_dimension_sizes() : utility::FixedSizeLexicographicalIterator< S > , utility::LexicographicalIterator
• set_dimensionality() : numeric::interpolation::spline::PolycubicSplineBase , numeric::MathNTensorBase< T >
• set_double_msg() : utility::SimulateMPIMessage
• set_doubles_msg() : utility::SimulateMPIMessage
• set_element_w_attributes() : utility::tag::XMLSchemaRepeatableCTNode
• set_expression() : numeric::expression_parser::UnaryExpression
• set_file_contents() : utility::io::FileContentsMap , utility::tag::XMLErrorHandler
• set_file_name() : PhProtocol
• set_first_expression() : numeric::expression_parser::BinaryExpression
• set_group_subelement() : utility::tag::XMLSchemaRepeatableCTNode
• set_head() : utility::in_place_list< T >
• set_identity() : numeric::HomogeneousTransform< T >
• set_identity_rotation() : numeric::HomogeneousTransform< T >
• set_identity_transform() : numeric::HomogeneousTransform< T >
• set_indent() : basic::Emitter
• set_index() : utility::libsvm::Svm_node_rosetta , utility::SimulateMPIMessage
• set_index_and_owner() : utility::graph::UEVertex< V, E >
• set_integer_msg() : utility::SimulateMPIMessage
• set_integers_msg() : utility::SimulateMPIMessage
• set_interpolator() : numeric::interpolation::Histogram< typename, typename >
• set_ios_hook() : basic::Tracer , basic::TracerImpl , pyrosetta.logging_support.PythonLoggingSink , test.T007_TracerIO.MyPyTracer
• set_keep_input_scores() : MyScoreMover
• set_kids_naming_func() : utility::tag::XMLSchemaRepeatableCTNode
• set_lb_function() : numeric::interpolation::spline::Interpolator
• set_lower() : numeric::geometry::BoundingBox< typename >
• set_matrix_A() : basic::svd::SVD_Solver
• set_model_group() : utility::tag::XMLSchemaComplexType
• set_mpi_rank() : utility::SimulateMPI
• set_neighbor_distance_cutoff() : BacksideHbondFinderMover
• set_new_final_stream() : basic::TracerImpl
• set_next() : utility::graph::NegSpaceElement< T >
• set_next_correspondence() : utility::subset_mapping
• set_next_size() : boost::unordered_object_pool< T, UserAllocator >
• set_nread_limit_for_file() : utility::io::FileContentsMap
• set_num_neighbors_counting_self_static() : utility::graph::Node
• set_num_nodes() : utility::graph::Digraph , utility::graph::Graph , utility::graph::LowMemGraph< _Node, _Edge >
• set_num_vertices() : utility::graph::UpperEdgeGraph< V, E >
• set_open_mode() : basic::resource_manager::locator::FileListResourceLocator , basic::resource_manager::locator::FileSystemResourceLocator
• set_option_value_cl() : utility::options::OptionCollection
• set_option_value_file() : utility::options::OptionCollection
• set_params() : numeric::interpolation::Histogram< typename, typename >
• set_parent() : basic::datacache::HierarchicalDataMap
• set_periodic() : numeric::interpolation::InterpolatedPotential< N >
• set_pH_neighbor_pack() : PhProtocol
• set_pH_prepack() : PhProtocol
• set_pH_relax() : PhProtocol
• set_pka_all() : PhProtocol
• set_pka_rad() : PhProtocol
• set_point() : numeric::HomogeneousTransform< T >
• set_pos_in_owners_list() : utility::graph::DirectedEdge , utility::graph::Edge
• set_position_from_index() : utility::FixedSizeLexicographicalIterator< S > , utility::LexicographicalIterator
• set_postgres_schema_search_path() : utility::sql_database::DatabaseSessionManager
• set_pq_schema() : utility::sql_database::session
• set_protein_pack_reps() : mutant_modeler.MutantModeler
• set_PyExitCallBack() : utility::py::PyExitCallback
• set_quote_options() : utility::tag::Tag
• set_random_torsion() : MPDomainAssembly
• set_ref_pose_from_filename() : DockGlycansProtocol
• set_reference_energies() : supercharge
• set_res_no() : PhProtocol
• set_resfile() : supercharge
• set_resfile_AvNAPSA() : supercharge
• set_root_node_naming_func() : utility::tag::XMLSchemaRepeatableCTNode
• set_rosetta_prefix() : mutant_modeler.MutantModeler
• set_rotamer_prot_stats() : PhProtocol
• set_run_locally() : mutant_modeler.MutantModeler
• set_schema() : utility::tag::XMLValidator , utility::tag::XMLValidatorImpl
• set_scorefxn() : ScoreEachBenchmark
• set_search_paths() : basic::resource_manager::locator::FileSystemResourceLocator
• set_second_expression() : numeric::expression_parser::BinaryExpression
• set_seed() : numeric::random::RandomGenerator
• set_sfxn() : mutant_modeler.MutantModeler
• set_show_accessed_options_flag() : utility::options::OptionCollection
• set_show_unused_options_flag() : utility::options::OptionCollection
• set_size_msg() : utility::SimulateMPIMessage
• set_sizes_msg() : utility::SimulateMPIMessage
• set_skip_scoring() : MyScoreMover
• set_source_size() : utility::subset_mapping
• set_string() : fmt::internal::MakeValue< Formatter >
• set_string_msg() : utility::SimulateMPIMessage
• set_subelements_pick_one() : utility::tag::XMLSchemaComplexTypeGenerator
• set_subelements_pick_one_optional() : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• set_subelements_pick_one_or_none() : utility::tag::XMLSchemaComplexTypeGenerator
• set_subelements_pick_one_required() : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• set_subelements_repeatable() : utility::tag::XMLSchemaComplexTypeGenerator , utility::tag::XMLSchemaComplexTypeGeneratorImpl
• set_subelements_single_appearance_optional() : utility::tag::XMLSchemaComplexTypeGenerator , utility::tag::XMLSchemaComplexTypeGeneratorImpl
• set_subelements_single_appearance_required() : utility::tag::XMLSchemaComplexTypeGenerator , utility::tag::XMLSchemaComplexTypeGeneratorImpl
• set_subelements_single_appearance_required_and_ordered() : utility::tag::XMLSchemaComplexTypeGenerator , utility::tag::XMLSchemaComplexTypeGeneratorImpl
• set_surface() : supercharge
• set_tail() : utility::in_place_list< T >
• set_throw_on_double_registration() : basic::resource_manager::ResourceLoaderFactory , basic::resource_manager::ResourceLocatorFactory
• set_token_type() : numeric::expression_parser::SimpleToken
• set_tracer_options() : basic::TracerImpl
• set_transaction_mode() : utility::sql_database::session
• set_transform() : numeric::HomogeneousTransform< T >
• set_ub_function() : numeric::interpolation::spline::Interpolator
• set_unit() : numeric::MathMatrix< T >
• set_upper() : numeric::geometry::BoundingBox< typename >
• set_value() : numeric::expression_parser::LiteralExpression , numeric::expression_parser::VariableExpression , numeric::MathNTensor< T, N > , numeric::MathNTensorBase< T > , utility::libsvm::Svm_node_rosetta , utility::options::Option , utility::options::ScalarOption , utility::options::VectorOption
• set_vector_b() : basic::svd::SVD_Solver
• set_visited() : numeric::ClusteringTreeNode
• set_weight() : numeric::random::WeightedSampler
• set_wt_RNA_secstruct() : mutant_modeler.MutantModeler
• set_xaxis_rotation_deg() : numeric::HomogeneousTransform< T >
• set_xaxis_rotation_rad() : numeric::HomogeneousTransform< T >
• set_yaxis_rotation_deg() : numeric::HomogeneousTransform< T >
• set_yaxis_rotation_rad() : numeric::HomogeneousTransform< T >
• set_zaxis_rotation_deg() : numeric::HomogeneousTransform< T >
• set_zaxis_rotation_rad() : numeric::HomogeneousTransform< T >
• set_zero() : numeric::MathMatrix< T >
• setAccessed() : utility::tag::Tag
• setName() : utility::tag::Tag
• SetObjects() : numeric::VoxelGrid< typename >
• SetOfSubelementsBehavior : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• setOption() : utility::tag::Tag
• setOptions() : utility::tag::Tag
• sets() : utility::graph::DisjointSets
• setSeed() : numeric::random::mt19937_RG , numeric::random::standard_RG , numeric::random::uniform_RG
• setUp() : DatabaseIOBenchmark , DesignBenchmark , DockingBenchmark< dock, TScale > , FastRelaxPerformanceBenchmark
• setup() : HPatchByChainNPDCalculator
• setUp() : InteractionGraphPerformanceBenchmark
• setup() : LigandDockBench
• setUp() : LigandDockBenchmark , LigandDockScriptBenchmark , MinimizerBenchmark< sft, TScale >
• setup() : NBuriedUnsatsCalcultor
• setUp() : OptionCollectionBenchmark , PDB_IOBenchmark , PerformanceBenchmark
• setup() : pyrosetta.distributed.tasks.rosetta_scripts.BaseRosettaScriptsTask , pyrosetta.distributed.tasks.score.ScorePoseTask , pyrosetta.distributed.tasks.taskbase.TaskBase
• setUp() : pyrosetta.tests.distributed.test_dask.TestDaskDistribution , ResidueTypeBenchmark , ScoreAnalyticEtableBenchmark , ScoreBenchmark , ScoreEachBenchmark , ShearMoverBenchmark , SmallMoverBenchmark , XMLParseBenchmark
• setup() : zinc1_homodimer_design , zinc2_homodimer_design
• setup_filter_clashes() : zinc2_homodimer_setup
• setup_filter_stats() : DougsDockDesignMinimizeMagicMover
• setup_for_denseig() : InteractionGraphPerformanceBenchmark
• setup_for_linmemig() : InteractionGraphPerformanceBenchmark
• setup_for_mmstd() : FastRelaxPerformanceBenchmark , InteractionGraphPerformanceBenchmark
• setup_for_pdig() : InteractionGraphPerformanceBenchmark
• setup_for_sc12he() : FastRelaxPerformanceBenchmark , InteractionGraphPerformanceBenchmark
• setup_for_sc12sp2() : FastRelaxPerformanceBenchmark , InteractionGraphPerformanceBenchmark
• setup_for_score12() : FastRelaxPerformanceBenchmark , InteractionGraphPerformanceBenchmark
• setup_for_sp2hecart() : FastRelaxPerformanceBenchmark , InteractionGraphPerformanceBenchmark
• setup_grafted_monomer() : zinc2_homodimer_setup
• setup_homodimer() : zinc2_homodimer_setup
• setup_metalsite() : zinc1_homodimer_design , zinc2_homodimer_design
• setup_metalsite_constraints() : zinc1_homodimer_design
• setup_metalsites() : zinc2_homodimer_setup
• setup_movemap_bb_chi() : zinc1_homodimer_design
• setup_movers() : zinc1_homodimer_design
• setup_output_tag() : zinc1_homodimer_design
• setup_pert_foldtree() : DougsDockDesignMinimizeMagicMover
• setup_Pmls() : numeric::fourier::SHT
• setup_real() : ObjexxFCL::FArray1D< typename > , ObjexxFCL::FArray2D< typename > , ObjexxFCL::FArray3D< typename > , ObjexxFCL::FArray4D< typename > , ObjexxFCL::FArray5D< typename > , ObjexxFCL::FArray6D< typename > , ObjexxFCL::KeyFArray1D< typename > , ObjexxFCL::KeyFArray2D< typename > , ObjexxFCL::KeyFArray3D< typename > , ObjexxFCL::KeyFArray4D< typename > , ObjexxFCL::KeyFArray5D< typename > , ObjexxFCL::KeyFArray6D< typename >
• setup_rollmoving() : zinc1_homodimer_design
• setup_scorefunctions() : zinc1_homodimer_design
• setup_successful_ : ScoreEachBenchmark
• setup_taskfactory() : zinc1_homodimer_design
• setup_taskfactory_scorefunction_movers() : zinc2_homodimer_design
• setup_Weights() : numeric::fourier::SHT
• setup_Wig() : numeric::fourier::SHT
• SetupAdjacencyVector() : utility::graph::RingDetection< Graph >
• SetupGrid() : numeric::VoxelGrid< typename >
• SetWrapper() : ObjexxFCL::SetWrapper< typename >
• sf_ : DockGlycansProtocol
• sformat : numeric::random::mt19937_RG
• sformat_idx : numeric::random::mt19937_RG
• sfxn : mutant_modeler.MutantModeler
• sfxn_ : MPDomainAssembly , MyScoreMover , NBuriedUnsatsCalcultor
• shape() : numeric::VoxelArray< _Float, _Value >
• shape_ : numeric::VoxelArray< _Float, _Value >
• shared_from_this() : basic::datacache::CacheableString , basic::datacache::CacheableStringFloatMap , basic::datacache::CacheableStringIntegerMap , basic::datacache::CacheableStringMap , basic::datacache::CacheableUint64MathMatrixFloatMap , basic::datacache::DiagnosticData , basic::datacache::WriteableCacheableData , basic::datacache::WriteableCacheableMap
• sharm_invTransform() : numeric::fourier::SHT
• sharm_transform() : numeric::fourier::SHT
• shear_mover : ShearMoverBenchmark
• shear_mover_ : DockGlycansProtocol
• ShearMoverBenchmark() : ShearMoverBenchmark
• sheet_start_ : HDmakerMover
• sheet_stop_ : HDmakerMover
• shift_ : ObjexxFCL::FArray< typename >
• shift_pH_ : PhProtocol
• shift_set() : ObjexxFCL::FArray< typename >
• short : options_class.Option
• short_description() : utility::options::Option , utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• short_description_ : utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• short_max() : numeric::geometry::hashing::xyzStripeHash , numeric::geometry::hashing::xyzStripeHashWithMeta< T >
• short_min() : numeric::geometry::hashing::xyzStripeHash , numeric::geometry::hashing::xyzStripeHashWithMeta< T >
• short_of() : ObjexxFCL::Fstring
• shortd() : utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• shorter() : numeric::xyzTriple< typename > , numeric::xyzVector< typename >
• shorter_or_equal() : numeric::xyzTriple< typename > , numeric::xyzVector< typename >
• shouldVisitTemplateInstantiations() : BinderVisitor
• show() : basic::resource_manager::locator::DatabaseResourceLocator , basic::resource_manager::locator::FileListResourceLocator , basic::resource_manager::locator::FileSystemResourceLocator , basic::resource_manager::locator::NullResourceLocator , basic::resource_manager::ResourceLocator , DockGlycansProtocol , numeric::HomogeneousTransform< T > , numeric::kdtree::HyperRectangle , numeric::kdtree::KDPoint , numeric::kdtree::KDPointList , numeric::Polynomial_1d , numeric::xyzMatrix< typename > , numeric::xyzVector< typename > , utility::excn::Exception , utility::Show
• show_accessed_options() : utility::options::OptionCollection
• show_accessed_options_ : utility::options::OptionCollection
• show_all() : utility::options::OptionCollection
• show_all_hier() : utility::options::OptionCollection
• show_contents() : utility::Inline_File_Provider
• show_help() : utility::options::OptionCollection
• show_help_hier() : utility::options::OptionCollection
• show_inaccessed_user_options() : utility::options::OptionCollection
• show_option_help() : utility::options::OptionCollection
• show_option_help_hier() : utility::options::OptionCollection
• show_table_text() : utility::options::OptionCollection
• show_table_Wiki() : utility::options::OptionCollection
• show_unused_options() : utility::options::OptionCollection
• show_unused_options_ : utility::options::OptionCollection
• show_user() : utility::options::OptionCollection
• shrink() : ObjexxFCL::Chunk< T > , ObjexxFCL::ChunkVector< typename > , utility::BitVector< B > , utility::keys::ClassKeyMap< K, T, C > , utility::keys::ClassKeyVector< K, T, C > , utility::keys::KeyVector< K, T > , utility::keys::SmallKeyMap< K, T > , utility::keys::SmallKeyVector< K, T > , utility::vectorL< SSize, T, A > , utility::vectorL< L, bool, A >
• shrinking : svm_parameter
• SHT() : numeric::fourier::SHT
• si : Solver_NU
• side_length : test.Workshop9_my_shapes.MySquare
• sigma : basic::sampling::orientations::QuaternionGrid
• sign : SVR_Q
• signal_allowed() : utility::signals::BufferedSignalHub< ResultType, Signal > , utility::signals::SignalHub< ResultType, Signal >
• SignalHub() : utility::signals::SignalHub< ResultType, Signal >
• simple_element_naming_func_has_been_set() : utility::tag::XMLSchemaSimpleSubelementList
• SimpleExpressionCreator() : numeric::expression_parser::SimpleExpressionCreator
• SimpleInterpolator() : numeric::interpolation::spline::SimpleInterpolator
• SimpleToken() : numeric::expression_parser::SimpleToken
• simulate_mpi() : utility::SimulateMPI
• SimulateMPI() : utility::SimulateMPI
• SimulateMPIData() : utility::SimulateMPIData
• SimulateMPIMessage() : utility::SimulateMPIMessage
• simulation_ : utility::SimulateMPI
• sin_cos_tolerance() : numeric::NumericTraits< double > , numeric::NumericTraits< float > , numeric::NumericTraits< long double >
• sin_of : numeric::xyzTriple< typename > , numeric::xyzVector< typename >
• single_line_arrays_ : utility::json_spirit::Generator< Value_type, Ostream_type >
• single_query() : pyrosetta.protocols.structure_search.StructureSearchManager
• SingletonBase() : utility::SingletonBase< T >
• SIR : ObjexxFCL::FArray1A< typename > , ObjexxFCL::FArray1D< typename > , ObjexxFCL::FArray1P< typename > , ObjexxFCL::FArray2A< typename > , ObjexxFCL::FArray2D< typename > , ObjexxFCL::FArray2P< typename > , ObjexxFCL::FArray3A< typename > , ObjexxFCL::FArray3D< typename > , ObjexxFCL::FArray3P< typename > , ObjexxFCL::FArray4A< typename > , ObjexxFCL::FArray4D< typename > , ObjexxFCL::FArray4P< typename > , ObjexxFCL::FArray5A< typename > , ObjexxFCL::FArray5D< typename > , ObjexxFCL::FArray5P< typename > , ObjexxFCL::FArray6A< typename > , ObjexxFCL::FArray6D< typename > , ObjexxFCL::FArray6P< typename > , ObjexxFCL::KeyFArray1D< typename > , ObjexxFCL::KeyFArray2D< typename > , ObjexxFCL::KeyFArray3D< typename > , ObjexxFCL::KeyFArray4D< typename > , ObjexxFCL::KeyFArray5D< typename > , ObjexxFCL::KeyFArray6D< typename >
• SixDCoordinateBinner() : numeric::geometry::hashing::SixDCoordinateBinner
• SixDOffsetTree() : numeric::geometry::hashing::SixDOffsetTree
• size() : basic::datacache::ConstDataMap , basic::datacache::DataCache< Data > , basic::datacache::DataMap , Cache , fmt::BasicStringRef< Char > , fmt::BasicWriter< Char > , fmt::Buffer< T > , fmt::File , fmt::FormatInt , fmt::internal::Value::StringValue< Char > , numeric::ClusteringTreeNode , numeric::DietNode< T > , numeric::DiscreteIntervalEncodingTree< T >
• Size : numeric::geometry::hashing::SixDCoordinateBinner , numeric::geometry::hashing::SixDOffsetTree
• size() : numeric::geometry::hashing::xyzStripeHash
• Size : numeric::interpolation::spline::PolycubicSplineBase
• size() : numeric::kdtree::KDPoint , numeric::kdtree::KDPointList , numeric::kdtree::KDTree , numeric::MathMatrix< T > , numeric::MathNTensor< T, N >
• Size : numeric::MathNTensor< T, N > , numeric::MathNTensorBase< T >
• size() : numeric::MathVector< T > , numeric::random::WeightedSampler
• Size : numeric::VoxelGrid< typename >
• size() : ObjexxFCL::CArray< typename >
• Size : ObjexxFCL::CArray< typename >
• size() : ObjexxFCL::CArrayP< typename >
• Size : ObjexxFCL::CArrayP< typename >
• size() : ObjexxFCL::Chunk< T >
• Size : ObjexxFCL::Chunk< T >
• size() : ObjexxFCL::ChunkVector< typename >
• Size : ObjexxFCL::ChunkVector< typename >
• size() : ObjexxFCL::Cstring
• Size : ObjexxFCL::Cstring , ObjexxFCL::FArray1< typename > , ObjexxFCL::FArray1A< typename > , ObjexxFCL::FArray1D< typename > , ObjexxFCL::FArray1P< typename > , ObjexxFCL::FArray2< typename > , ObjexxFCL::FArray2A< typename > , ObjexxFCL::FArray2D< typename > , ObjexxFCL::FArray2P< typename > , ObjexxFCL::FArray3< typename > , ObjexxFCL::FArray3A< typename > , ObjexxFCL::FArray3D< typename > , ObjexxFCL::FArray3P< typename > , ObjexxFCL::FArray4< typename > , ObjexxFCL::FArray4A< typename > , ObjexxFCL::FArray4D< typename > , ObjexxFCL::FArray4P< typename > , ObjexxFCL::FArray5< typename > , ObjexxFCL::FArray5A< typename > , ObjexxFCL::FArray5D< typename > , ObjexxFCL::FArray5P< typename > , ObjexxFCL::FArray6< typename > , ObjexxFCL::FArray6A< typename > , ObjexxFCL::FArray6D< typename > , ObjexxFCL::FArray6P< typename >
• size() : ObjexxFCL::FArray< typename >
• Size : ObjexxFCL::FArray< typename >
• size() : ObjexxFCL::FArraySection< typename >
• Size : ObjexxFCL::FArraySection< typename >
• size() : ObjexxFCL::Fstring
• Size : ObjexxFCL::Fstring
• size() : ObjexxFCL::IndexRange
• Size : ObjexxFCL::IndexRange , ObjexxFCL::internal::ObserverGraph , ObjexxFCL::KeyFArray1D< typename > , ObjexxFCL::KeyFArray2D< typename > , ObjexxFCL::KeyFArray3D< typename > , ObjexxFCL::KeyFArray4D< typename > , ObjexxFCL::KeyFArray5D< typename > , ObjexxFCL::KeyFArray6D< typename >
• size() : utility::BitSet< B >
• Size : utility::BitSet< B >
• size() : utility::BitVector< B >
• Size : utility::BitVector< B >
• size() : utility::fixedsizearray0< T, S >
• Size : utility::fixedsizearray0< T, S >
• size() : utility::fixedsizearray1< T, S >
• Size : utility::fixedsizearray1< T, S >
• size() : utility::FixedSizeLexicographicalIterator< S >
• Size : utility::FixedSizeLexicographicalIterator< S >
• size() : utility::graph::Array0< T > , utility::graph::ArrayPoolElement< T > , utility::graph::DirectedEdgeList , utility::graph::EdgeList , utility::graph::HideVertexVisitor< Graph > , utility::heap , utility::in_place_list< T >
• Size : utility::in_place_list< T > , utility::keys::AutoKey< O, S, C >
• size() : utility::keys::ClassKeyMap< K, T, C >
• Size : utility::keys::ClassKeyMap< K, T, C >
• size() : utility::keys::ClassKeyVector< K, T, C >
• Size : utility::keys::ClassKeyVector< K, T, C > , utility::keys::Key , utility::keys::KeyCount
• size() : utility::keys::KeyLookup< K >
• Size : utility::keys::KeyLookup< K > , utility::keys::KeyMapTraits< K, T > , utility::keys::KeySetTraits< K >
• size() : utility::keys::KeyVector< K, T >
• Size : utility::keys::KeyVector< K, T > , utility::keys::KeyVectorTraits< K >
• size() : utility::keys::SmallKeyMap< K, T >
• Size : utility::keys::SmallKeyMap< K, T >
• size() : utility::keys::SmallKeyVector< K, T >
• Size : utility::keys::SmallKeyVector< K, T > , utility::keys::UserKey< O, S, C >
• size() : utility::LexicographicalIterator
• Size : utility::LexicographicalIterator , utility::list_element< T >
• size() : utility::options::Option
• Size : utility::options::Option
• size() : utility::options::ScalarOption_T_< K, T > , utility::options::VariantOption< O >
• Size : utility::options::VariantOption< O >
• size() : utility::options::VectorOption_T_< K, T > , utility::OrderedTuple< T >
• Size : utility::OrderedTuple< T > , utility::pointer::ReferenceCount , utility::signals::BufferedSignalHub< ResultType, Signal > , utility::signals::PausableSignalHub< ResultType, Signal >
• size() : utility::signals::SignalHub< ResultType, Signal >
• Size : utility::signals::SignalHub< ResultType, Signal > , utility::signals::TokenHub< ResultType, Signal >
• size() : utility::tag::Tag
• Size : utility::vector0< T, A > , utility::vector0< bool, A > , utility::vector1< T, A > , utility::vector1< bool, A > , utility::vectorL< SSize, T, A > , utility::vectorL< L, bool, A >
• size1() : ObjexxFCL::FArray1< typename > , ObjexxFCL::FArray1A< typename > , ObjexxFCL::FArray1D< typename > , ObjexxFCL::FArray1P< typename > , ObjexxFCL::FArray2< typename > , ObjexxFCL::FArray3< typename > , ObjexxFCL::FArray4< typename > , ObjexxFCL::FArray5< typename > , ObjexxFCL::FArray6< typename > , ObjexxFCL::KeyFArray1D< typename >
• size2() : ObjexxFCL::FArray2< typename > , ObjexxFCL::FArray2A< typename > , ObjexxFCL::FArray2D< typename > , ObjexxFCL::FArray2P< typename > , ObjexxFCL::FArray3< typename > , ObjexxFCL::FArray4< typename > , ObjexxFCL::FArray5< typename > , ObjexxFCL::FArray6< typename > , ObjexxFCL::KeyFArray2D< typename >
• size3() : ObjexxFCL::FArray3< typename > , ObjexxFCL::FArray3A< typename > , ObjexxFCL::FArray3D< typename > , ObjexxFCL::FArray3P< typename > , ObjexxFCL::FArray4< typename > , ObjexxFCL::FArray5< typename > , ObjexxFCL::FArray6< typename > , ObjexxFCL::KeyFArray3D< typename >
• size4() : ObjexxFCL::FArray4< typename > , ObjexxFCL::FArray4A< typename > , ObjexxFCL::FArray4D< typename > , ObjexxFCL::FArray4P< typename > , ObjexxFCL::FArray5< typename > , ObjexxFCL::FArray6< typename > , ObjexxFCL::KeyFArray4D< typename >
• size5() : ObjexxFCL::FArray5< typename > , ObjexxFCL::FArray5A< typename > , ObjexxFCL::FArray5D< typename > , ObjexxFCL::FArray5P< typename > , ObjexxFCL::FArray6< typename > , ObjexxFCL::KeyFArray5D< typename >
• size6() : ObjexxFCL::FArray6< typename > , ObjexxFCL::FArray6A< typename > , ObjexxFCL::FArray6D< typename > , ObjexxFCL::FArray6P< typename > , ObjexxFCL::KeyFArray6D< typename >
• size_ : basic::database::schema_generator::DbDataType , fmt::BasicStringRef< Char > , fmt::Buffer< T > , numeric::ClusteringTreeNode , numeric::kdtree::KDTree , numeric::MathMatrix< T > , numeric::MathNTensor< T, N > , numeric::MathTensor< T > , numeric::MathVector< T > , ObjexxFCL::CArray< typename > , ObjexxFCL::CArrayP< typename > , ObjexxFCL::Chunk< T > , ObjexxFCL::ChunkVector< typename > , ObjexxFCL::FArray< typename > , ObjexxFCL::FArraySection< typename > , ObjexxFCL::IndexRange , utility::graph::Array0< T > , utility::graph::RingSizeVisitor< Graph, DistanceMap, LabelMap >
• size_bounded() : ObjexxFCL::FArray< typename >
• size_constraint_string() : utility::options::Option , utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• size_dynamic() : ObjexxFCL::DynamicIndexRange
• size_msg() : utility::SimulateMPIMessage
• size_msg_ : utility::SimulateMPIMessage
• size_of() : ObjexxFCL::FArray< typename >
• size_set() : ObjexxFCL::FArray< typename >
• size_type : boost::unordered_object_pool< T, UserAllocator > , ObjexxFCL::CArray< typename > , ObjexxFCL::CArrayP< typename > , ObjexxFCL::Chunk< T > , ObjexxFCL::ChunkVector< typename > , ObjexxFCL::Cstring , ObjexxFCL::FArray1< typename > , ObjexxFCL::FArray1A< typename > , ObjexxFCL::FArray1D< typename > , ObjexxFCL::FArray1P< typename > , ObjexxFCL::FArray2< typename > , ObjexxFCL::FArray2A< typename > , ObjexxFCL::FArray2D< typename > , ObjexxFCL::FArray2P< typename > , ObjexxFCL::FArray3< typename > , ObjexxFCL::FArray3A< typename > , ObjexxFCL::FArray3D< typename > , ObjexxFCL::FArray3P< typename > , ObjexxFCL::FArray4< typename > , ObjexxFCL::FArray4A< typename > , ObjexxFCL::FArray4D< typename > , ObjexxFCL::FArray4P< typename > , ObjexxFCL::FArray5< typename > , ObjexxFCL::FArray5A< typename > , ObjexxFCL::FArray5D< typename > , ObjexxFCL::FArray5P< typename > , ObjexxFCL::FArray6< typename > , ObjexxFCL::FArray6A< typename > , ObjexxFCL::FArray6D< typename > , ObjexxFCL::FArray6P< typename > , ObjexxFCL::FArray< typename > , ObjexxFCL::FArraySection< typename > , ObjexxFCL::Fstring , ObjexxFCL::IndexRange , ObjexxFCL::internal::ObserverGraph , ObjexxFCL::KeyFArray1D< typename > , ObjexxFCL::KeyFArray2D< typename > , ObjexxFCL::KeyFArray3D< typename > , ObjexxFCL::KeyFArray4D< typename > , ObjexxFCL::KeyFArray5D< typename > , ObjexxFCL::KeyFArray6D< typename > , utility::BitSet< B > , utility::BitVector< B > , utility::keys::AutoKey< O, S, C > , utility::keys::ClassKeyMap< K, T, C > , utility::keys::ClassKeyVector< K, T, C > , utility::keys::Key , utility::keys::KeyCount , utility::keys::KeyLookup< K > , utility::keys::KeyMapTraits< K, T > , utility::keys::KeySetTraits< K > , utility::keys::KeyVector< K, T > , utility::keys::KeyVectorTraits< K > , utility::keys::SmallKeyMap< K, T > , utility::keys::SmallKeyVector< K, T > , utility::keys::UserKey< O, S, C > , utility::options::Option , utility::options::VariantOption< O > , utility::pointer::ReferenceCount , utility::vector0< T, A > , utility::vector0< bool, A > , utility::vector1< T, A > , utility::vector1< bool, A > , utility::vectorL< SSize, T, A > , utility::vectorL< L, bool, A >
• size_unbounded() : ObjexxFCL::FArray< typename >
• sizes_msg() : utility::SimulateMPIMessage
• sizes_msg_ : utility::SimulateMPIMessage
• SizeType : binder::vector_binder< T, Allocator > , rosetta_binders::utility_vector_binder< Vector, L, T, Allocator >
• Skip() : ObjexxFCL::format::Skip
• skip_hd_docking_ : HDdesignMover
• skip_minimize : erraser_option.erraser_option
• skip_scoring_ : MyScoreMover
• skip_single_res_minimize : erraser_option.erraser_option
• skipping_requested() : binder::Binder
• skipping_requested_ : binder::Binder
• slice_nearby : erraser_option.erraser_option
• slide_together_ : LigandDockBench
• slider_ : DockGlycansProtocol
• slope : numeric::interpolation::spline::LinearFunction
• small_mover : SmallMoverBenchmark
• small_mover_ : DockGlycansProtocol
• SmallKeyMap() : utility::keys::SmallKeyMap< K, T >
• SmallKeyVector() : utility::keys::SmallKeyVector< K, T >
• SmallMoverBenchmark() : SmallMoverBenchmark
• so3_ : numeric::fourier::SHT
• so3_correlate() : numeric::fourier::SHT
• SO3coeffs() : numeric::fourier::SO3coeffs
• so3CombineCoef() : numeric::fourier::SHT
• socket : PyMOL-RosettaServer.PR_UDPServer
• softrep_min_mover_ : zinc1_homodimer_design
• softrep_sym_scorefxn_ : zinc1_homodimer_design
• sol_mult_ : DockGlycansProtocol
• Solve() : Solver , Solver_NU
• Solver() : Solver
• Solver_NU() : Solver_NU
• sort() : utility::keys::ClassKeyVector< K, T, C >
• sort_binders() : binder::Context
• sorted_values() : numeric::kdtree::KDPointList
• source_ : ObjexxFCL::FArray1P< typename > , ObjexxFCL::FArray2P< typename > , ObjexxFCL::FArray3P< typename > , ObjexxFCL::FArray4P< typename > , ObjexxFCL::FArray5P< typename > , ObjexxFCL::FArray6P< typename >
• source_id_is_mapped() : utility::subset_mapping
• source_residues : pyrosetta.protocols.structure_search.StructureSearchManager
• source_size() : utility::subset_mapping
• Sources : ObjexxFCL::internal::ObserverGraph
• sources_ : ObjexxFCL::internal::ObserverGraph
• space() : utility::json_spirit::Generator< Value_type, Ostream_type >
• space_prefixed() : utility::options::OptionCollection
• spec() : fmt::internal::ArgFormatterBase< Impl, Char, Spec >
• spec_ : fmt::internal::ArgFormatterBase< Impl, Char, Spec >
• specified_check() : utility::options::Option , utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• specified_report() : utility::options::Option , utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• SpecType : fmt::internal::ArgFormatterBase< Impl, Char, Spec >
• sph_standardize() : numeric::fourier::SHT
• sphericalVector() : numeric::sphericalVector< typename >
• spline : numeric::interpolation::Histogram< typename, typename >
• spline_interpolator_ : numeric::interpolation::Histogram< typename, typename >
• SplineGenerator() : numeric::interpolation::spline::SplineGenerator
• SplineParameters() : numeric::SplineParameters
• split_axis() : numeric::kdtree::KDNode
• split_axis_ : numeric::kdtree::KDNode
• split_max() : numeric::DietNode< T >
• split_min() : numeric::DietNode< T >
• split_tuple() : numeric::DietNode< T >::split_tuple
• sql_command_ : basic::resource_manager::locator::DatabaseResourceLocator
• sqlite3 : utility::sql_database::DatabaseMode
• sqr() : numeric::interpolation::spline::BicubicSpline , numeric::interpolation::spline::CubicSpline
• sqrt_2pi() : numeric::NumericTraits< T > , numeric::NumericTraits< double > , numeric::NumericTraits< float > , numeric::NumericTraits< long double >
• square() : numeric::xyzTriple< typename > , numeric::xyzVector< typename > , ObjexxFCL::CArray< typename > , ObjexxFCL::CArrayP< typename > , ObjexxFCL::ChunkVector< typename > , ObjexxFCL::FArray2< typename >
• square_norm() : numeric::MathVector< T >
• SquarerootExpression() : numeric::expression_parser::SquarerootExpression
• src() : utility::SimulateMPIMessage
• src_ : utility::SimulateMPIMessage
• src_2_dst_ : utility::subset_mapping
• ss_optional : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• ss_pick_one_opt : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• ss_pick_one_req : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• ss_repeatable : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• ss_required : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• SSize : numeric::geometry::hashing::SixDOffsetTree , utility::fixedsizearray0< T, S > , utility::fixedsizearray1< T, S > , utility::vector0< T, A > , utility::vector0< bool, A > , utility::vector1< T, A > , utility::vector1< bool, A > , utility::vectorL< SSize, T, A > , utility::vectorL< L, bool, A >
• ssize_type : utility::vector0< T, A > , utility::vector0< bool, A > , utility::vector1< T, A > , utility::vector1< bool, A > , utility::vectorL< SSize, T, A > , utility::vectorL< L, bool, A >
• SSizeType : rosetta_binders::utility_vector_binder< Vector, L, T, Allocator >
• sstring : fmt::internal::Value
• stack_ : binder::IncludeSet , utility::json_spirit::Semantic_actions< Value_type, Iter_type >
• standard : utility::sql_database::TransactionMode
• standard_RG() : numeric::random::standard_RG
• standard_width() : ObjexxFCL::TypeTraits< T > , ObjexxFCL::TypeTraits< double > , ObjexxFCL::TypeTraits< float > , ObjexxFCL::TypeTraits< int > , ObjexxFCL::TypeTraits< long double > , ObjexxFCL::TypeTraits< long int > , ObjexxFCL::TypeTraits< short int > , ObjexxFCL::TypeTraits< unsigned int > , ObjexxFCL::TypeTraits< unsigned long int > , ObjexxFCL::TypeTraits< unsigned short int >
• standardise_filename() : utility::Inline_File_Provider
• Star() : ObjexxFCL::Star
• start() : numeric::MultiDimensionalHistogram , utility::json_spirit::Json_grammer< Value_type, Iter_type >::definition< ScannerT >
• start_ : numeric::interpolation::spline::BicubicSpline , numeric::interpolation::spline::CubicSpline , numeric::interpolation::spline::PolycubicSpline< N > , numeric::interpolation::spline::PolycubicSpline< 1 > , numeric::interpolation::spline::PolycubicSpline< 2 > , numeric::interpolation::spline::TricubicSpline , numeric::MultiDimensionalHistogram
• start_clock_ : basic::DynamicProfileThis
• start_decoy() : pyrosetta.toolbox.py_jobdistributor.PyJobDistributor
• start_doc() : basic::Emitter , basic::JsonEmitter , basic::YamlEmitter
• start_from_ : LigandDockBench
• start_list() : basic::Emitter
• start_map() : basic::Emitter
• start_pose : DockingBenchmark< dock, TScale > , MinimizerBenchmark< sft, TScale >
• start_raw() : basic::Emitter , basic::JsonEmitter , basic::YamlEmitter
• start_res_list_ : ExposedStrandMover
• start_time : pyrosetta.distributed.utility.log.ProgressLogger
• starting_centroid_pose_ : zinc1_homodimer_design
• starting_fullatom_pose_ : zinc1_homodimer_design
• starting_monomer_pose_ : zinc1_homodimer_design
• starting_pose_ : UBQ_E2Mover , UBQ_GTPase_disulfide_Mover
• STARTING_RAMP_DOWN_FACTOR : DockGlycansProtocol
• STARTING_RAMP_UP_FACTOR : DockGlycansProtocol
• State : ObjexxFCL::FArrayInitializer< typename, class > , utility::options::Option
• state_ : ObjexxFCL::FArrayInitializer< typename, class > , utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• states() : numeric::fourier::kiss_fftnd_state
• states_ : numeric::fourier::kiss_fftnd_state
• static_int_ : utility::py::PyExitCallback
• static_string_ : utility::py::PyExitCallback
• static_string_const_ : utility::py::PyExitCallback
• StaticIndexRange : ObjexxFCL::IndexRange , ObjexxFCL::StaticIndexRange
• status() : numeric::RocPoint
• status_ : numeric::RocPoint
• std_manipulator : utility::io::irstream , utility::io::izstream
• steepness_ : ScoreFragmentSetMover
• step_ : numeric::interpolation::Histogram< typename, typename >
• step_size() : numeric::interpolation::Histogram< typename, typename >
• stepbound : numeric::nls::lm_control_struct
• StepWiseJobQueen() : StepWiseJobQueen
• stop_level_ : utility::graph::RingSizeVisitor< Graph, DistanceMap, LabelMap >
• store() : boost::unordered_object_pool< T, UserAllocator >
• str() : basic::datacache::CacheableString , fmt::BasicWriter< Char > , fmt::FormatInt , fmt::StrFormatSpec< Char >
• str_ : basic::datacache::CacheableString , fmt::FormatInt , fmt::StrFormatSpec< Char > , ObjexxFCL::Cstring , ObjexxFCL::Fstring
• strand_def_vector_ : ExposedStrandMover
• strand_pose_nums_ : ExposedStrandMover
• stream() : basic::resource_manager::locator::FileStream , basic::resource_manager::locator::NullStream , basic::resource_manager::locator::StringResourceStream , basic::resource_manager::ResourceStream , utility::io::icstream , utility::io::irstream , utility::io::izstream , utility::io::ocstream , utility::io::orstream , utility::io::ozstream
• stream_ : basic::resource_manager::locator::FileStream , basic::resource_manager::locator::NullStream , basic::resource_manager::locator::StringResourceStream
• Stream_reader() : utility::json_spirit::Stream_reader< Istream_type, Value_type >
• Stream_reader_thrower() : utility::json_spirit::Stream_reader_thrower< Istream_type, Value_type >
• stream_setup() : utility::options::RealOption , utility::options::RealVectorOption , utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• StrFormatSpec() : fmt::StrFormatSpec< Char >
• strict() : utility::Bound< typename >
• Strict() : utility::Bound< typename >
• strict_ : utility::Bound< typename >
• strict_lower() : utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• strict_upper() : utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• string : binder::Binder , binder::Config , binder::Context , fmt::internal::Value
• STRING : fmt::internal::Value
• string_ : utility::json_spirit::Json_grammer< Value_type, Iter_type >::definition< ScannerT >
• string_msg() : utility::SimulateMPIMessage
• string_msg_ : utility::SimulateMPIMessage
• string_of() : ObjexxFCL::Fstring
• String_type : utility::json_spirit::Config_map< String > , utility::json_spirit::Config_vector< String > , utility::json_spirit::Generator< Value_type, Ostream_type > , utility::json_spirit::Pair_impl< Config > , utility::json_spirit::Semantic_actions< Value_type, Iter_type > , utility::json_spirit::Value_impl< Config >
• string_value_ : utility::py::Base
• string_vectors_ : utility::options::OptionCollection
• StringOption() : utility::options::StringOption
• StringOptionKey() : utility::options::StringOptionKey
• StringResourceStream() : basic::resource_manager::locator::StringResourceStream
• Strings : utility::options::OptionCollection
• strings_ : utility::options::OptionCollection
• StringVectorOption() : utility::options::StringVectorOption
• StringVectorOptionKey() : utility::options::StringVectorOptionKey
• StringVectors : utility::options::OptionCollection
• strip() : ObjexxFCL::Fstring
• strip_whitespace() : ObjexxFCL::Fstring
• stripped() : ObjexxFCL::Fstring
• stripped_whitespace() : ObjexxFCL::Fstring , utility::keys::KeyLookup< K >
• struct_filename_ : ExposedStrandMover
• structure_feature_ : DatabaseIOBenchmark
• sub_ : ObjexxFCL::Fstring
• subelement_behavior() : utility::tag::XMLSchemaComplexTypeGenerator , utility::tag::XMLSchemaComplexTypeGeneratorImpl
• subelement_behavior_ : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• subelement_sets_ : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• subelements_ : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• SubelementSets : utility::tag::XMLSchemaComplexTypeGeneratorImpl
• subset_mapping() : utility::subset_mapping
• substate() : numeric::fourier::kiss_dct_state , numeric::fourier::kiss_fftr_state , numeric::fourier::kiss_fftsplit_state
• substate_ : numeric::fourier::kiss_dct_state , numeric::fourier::kiss_fftr_state , numeric::fourier::kiss_fftsplit_state
• substitution_group() : utility::tag::XMLSchemaElement
• substitution_group_ : utility::tag::XMLSchemaElement
• subtract : numeric::sphericalVector< typename > , numeric::xyzTriple< typename > , numeric::xyzVector< typename >
• subtract_diagonal() : numeric::xyzMatrix< typename >
• SubtractExpression() : numeric::expression_parser::SubtractExpression
• suffix() : utility::options::OptionCollection
• sum() : numeric::MathNTensor< T, N > , numeric::MathVector< T >
• sum_radius() : numeric::geometry::hashing::SixDOffsetTree
• Super : basic::datacache::BasicDataCache , basic::datacache::DataCache< Data > , ObjexxFCL::DimensionExpressionCon , ObjexxFCL::DimensionExpressionCube , ObjexxFCL::DimensionExpressionDiv , ObjexxFCL::DimensionExpressionMax , ObjexxFCL::DimensionExpressionMin , ObjexxFCL::DimensionExpressionMul , ObjexxFCL::DimensionExpressionPow , ObjexxFCL::DimensionExpressionRef , ObjexxFCL::DimensionExpressionSquare , ObjexxFCL::DimensionExpressionSub , ObjexxFCL::DimensionExpressionSum , ObjexxFCL::DynamicIndexRange , ObjexxFCL::FArray1< typename > , ObjexxFCL::FArray1A< typename > , ObjexxFCL::FArray1D< typename > , ObjexxFCL::FArray1P< typename > , ObjexxFCL::FArray2< typename > , ObjexxFCL::FArray2A< typename > , ObjexxFCL::FArray2D< typename > , ObjexxFCL::FArray2P< typename > , ObjexxFCL::FArray3< typename > , ObjexxFCL::FArray3A< typename > , ObjexxFCL::FArray3D< typename > , ObjexxFCL::FArray3P< typename > , ObjexxFCL::FArray4< typename > , ObjexxFCL::FArray4A< typename > , ObjexxFCL::FArray4D< typename > , ObjexxFCL::FArray4P< typename > , ObjexxFCL::FArray5< typename > , ObjexxFCL::FArray5A< typename > , ObjexxFCL::FArray5D< typename > , ObjexxFCL::FArray5P< typename > , ObjexxFCL::FArray6< typename > , ObjexxFCL::FArray6A< typename > , ObjexxFCL::FArray6D< typename > , ObjexxFCL::FArray6P< typename > , ObjexxFCL::Fsubstring , ObjexxFCL::KeyFArray1D< typename > , ObjexxFCL::KeyFArray2D< typename > , ObjexxFCL::KeyFArray3D< typename > , ObjexxFCL::KeyFArray4D< typename > , ObjexxFCL::KeyFArray5D< typename > , ObjexxFCL::KeyFArray6D< typename > , ObjexxFCL::StaticIndexRange , utility::keys::AutoKey< O, S, C > , utility::keys::UserKey< O, S, C > , utility::options::AnyOption< T > , utility::options::AnyOptionKey , utility::options::AnyVectorOption< T > , utility::options::AnyVectorOptionKey , utility::options::BooleanOption , utility::options::BooleanOptionKey , utility::options::BooleanVectorOption , utility::options::BooleanVectorOptionKey , utility::options::FileOption , utility::options::FileOptionKey , utility::options::FileVectorOption , utility::options::FileVectorOptionKey , utility::options::IntegerOption , utility::options::IntegerOptionKey , utility::options::IntegerVectorOption , utility::options::IntegerVectorOptionKey , utility::options::OptionKey , utility::options::PathOption , utility::options::PathOptionKey , utility::options::PathVectorOption , utility::options::PathVectorOptionKey , utility::options::RealOption , utility::options::RealOptionKey , utility::options::RealVectorOption , utility::options::RealVectorOptionKey , utility::options::ResidueChainVectorOption , utility::options::ResidueChainVectorOptionKey , utility::options::ScalarOption , utility::options::ScalarOption_T_< K, T > , utility::options::ScalarOptionKey , utility::options::StringOption , utility::options::StringOptionKey , utility::options::StringVectorOption , utility::options::StringVectorOptionKey , utility::options::VectorOption , utility::options::VectorOption_T_< K, T > , utility::options::VectorOptionKey , utility::signals::BufferedSignalHub< ResultType, Signal > , utility::signals::LinkUnit , utility::signals::PausableSignalHub< ResultType, Signal > , utility::signals::TokenHub< ResultType, Signal >
• super : utility::vector0< T, A > , utility::vector0< bool, A > , utility::vector1< T, A > , utility::vector1< bool, A > , utility::vectorL< SSize, T, A > , utility::vectorL< L, bool, A >
• super_mute() : basic::Tracer , basic::TracerImpl
• super_mute_() : basic::TracerImpl
• super_twiddles() : numeric::fourier::kiss_dct_state , numeric::fourier::kiss_fftr_state
• super_twiddles_ : numeric::fourier::kiss_dct_state , numeric::fourier::kiss_fftr_state
• supercharge() : supercharge
• Supported : fmt::internal::WCharHelper< T, Char > , fmt::internal::WCharHelper< T, wchar_t >
• suppress_CSI_codes() : utility::CSI_Sequence
• suppress_CSI_seq() : utility::CSI_Sequence
• surface_res_ : supercharge
• SV : svm_model
• sv_coef : svm_model
• sv_indices : svm_model
• svbksb() : basic::svd::SVD_Solver
• SVC_Q() : SVC_Q
• SVD_Solver() : basic::svd::SVD_Solver
• svdcmp() : basic::svd::SVD_Solver
• svm_model_ : utility::libsvm::Svm_rosetta
• Svm_node_rosetta() : utility::libsvm::Svm_node_rosetta
• Svm_rosetta() : utility::libsvm::Svm_rosetta
• svm_type : svm_parameter
• SVR_Q() : SVR_Q
• swap() : numeric::Quaternion< typename > , ObjexxFCL::CArray< typename > , ObjexxFCL::CArrayP< typename > , ObjexxFCL::Chunk< T > , ObjexxFCL::ChunkVector< typename > , ObjexxFCL::Cstring , ObjexxFCL::Dimension , ObjexxFCL::DynamicIndexRange , ObjexxFCL::FArray1D< typename > , ObjexxFCL::FArray2D< typename > , ObjexxFCL::FArray3D< typename > , ObjexxFCL::FArray4D< typename > , ObjexxFCL::FArray5D< typename > , ObjexxFCL::FArray6D< typename > , ObjexxFCL::IndexRange , ObjexxFCL::KeyFArray1D< typename > , ObjexxFCL::KeyFArray2D< typename > , ObjexxFCL::KeyFArray3D< typename > , ObjexxFCL::KeyFArray4D< typename > , ObjexxFCL::KeyFArray5D< typename > , ObjexxFCL::KeyFArray6D< typename > , ObjexxFCL::StaticIndexRange , utility::BitSet< B > , utility::BitVector< B > , utility::keys::ClassKeyMap< K, T, C > , utility::keys::ClassKeyVector< K, T, C > , utility::keys::KeyVector< K, T > , utility::keys::SmallKeyMap< K, T > , utility::keys::SmallKeyVector< K, T > , utility::pointer::DeepCopyOP< T > , utility::vectorL< SSize, T, A > , utility::vectorL< L, bool, A >
• swap1DB() : ObjexxFCL::FArray1< typename >
• swap2DB() : ObjexxFCL::FArray2< typename >
• swap3DB() : ObjexxFCL::FArray3< typename >
• swap4DB() : ObjexxFCL::FArray4< typename >
• swap5DB() : ObjexxFCL::FArray5< typename >
• swap6DB() : ObjexxFCL::FArray6< typename >
• swap_cols() : numeric::MathMatrix< T >
• swap_index() : Cache , Kernel , ONE_CLASS_Q , QMatrix , Solver , SVC_Q , SVR_Q
• swap_no_notify() : ObjexxFCL::Dimension , ObjexxFCL::DynamicIndexRange
• swap_rows() : numeric::MathMatrix< T >
• swapB() : ObjexxFCL::FArray< typename >
• sym_minmover_ : zinc2_homodimer_design
• sym_minmover_bb_ : zinc2_homodimer_design
• sym_minmover_sc_ : zinc2_homodimer_design
• sym_pack_mover_ : zinc1_homodimer_design , zinc2_homodimer_design
• sym_repack_minimize() : HDdesignMover
• sym_rottrials_mover_ : zinc1_homodimer_design
• sym_scorefxn_ : zinc1_homodimer_design
• symhash64() : numeric::xyzTransform< typename >
• symmetric() : ObjexxFCL::FArray2< typename >
• sync() : basic::basic_otstream< CharT, Traits >::basic_tstringbuf< _CharT, _Traits > , utility::io::mpi_stream::basic_mpi_streambuf< Elem, Tr, ElemA, ByteT, ByteAT > , zlib_stream::basic_zip_streambuf< Elem, Tr, ElemA, ByteT, ByteAT >
• SystemError() : fmt::SystemError