- d -

• define_interface() : minimize_ppi.cc
• delete_protein_from_pose() : rnp_ddg.cc
• delete_RNA_from_pose() : rnp_ddg.cc
• densityTools() : density_tools.cc
• destroy_pseudo_commandline() : init_util.hh
• determine_residues_to_rebuild() : erraser2.cc
• distance() : torsional_potential_corrections.cc , iterhybrid_selector.cc
• do_color_by_score() : rna_score.cc
• do_erraser2() : erraser2.cc
• do_terminal_opt() : ResidueDisorder.cc
• drrafter_error_estimation() : drrafter_error_estimation.cc
• dump_table() : torsional_potential_corrections.cc