- s -

• sample_torsions() : test_carbohydrate_scoring.cc
• save_feature() : rna_features.cc
• save_per_residue_scores() : score_aln2.cc , score_aln.cc
• second_preminimized_namer() : erraser2.cc
• sequence_tolerance_main() : sequence_tolerance.cc
• sequences_from_cmd_line() : score_aln.cc
• set_pep_cst() : pepspec_anchor_dock.cc
• set_pep_csts() : pepspec.cc
• set_throw_on_next_assertion_failure() : backtrace.cc , backtrace.hh
• setup_align_atom_map() : drrafter_error_estimation.cc
• setup_alignment_map() : rna_thread.cc
• setup_ca_constraints() : ensemble_generator_score12_sidechain_ver2.cc , minimize_with_cst.cc
• setup_mask() : rna_thread.cc
• setup_movers() : ensemble_generator_score12_sidechain_ver2.cc
• setup_rmsd_atom_map() : drrafter_error_estimation.cc
• setup_rna_minimizer() : cs_rosetta_rna.cc
• setup_score_function() : rnp_ddg.cc
• setup_segment_insert() : remodel.cc
• setup_tf() : sequence_recovery.cc
• shift_angles() : pepspec_anchor_dock.cc
• show() : mp_span_from_pdb.cc
• show_accuracy_report() : erraser2.cc
• sicdock_max_threads() : make_motif_tables.cc
• sicdock_num_threads() : make_motif_tables.cc
• sicdock_thread_num() : make_motif_tables.cc
• sigmoid_predict() : Svm.cc
• sigmoid_train() : Svm.cc
• simple_minimization() : rnp_ddg.cc
• simple_packing() : rnp_ddg.cc
• skipping_relax() : helix_from_sequence.cc
• slice_ellipsoid_envelope() : swa_rna_util.cc
• slice_sample_res_and_surrounding() : swa_rna_util.cc
• smoothen_values() : avrg_silent.cc
• solve_c_svc() : Svm.cc
• solve_epsilon_svr() : Svm.cc
• solve_nu_svc() : Svm.cc
• solve_nu_svr() : Svm.cc
• solve_one_class() : Svm.cc
• spanfile_for_each_chain() : mp_span_from_pdb.cc
• spanfile_from_pdb() : mp_span_from_pdb.cc
• sphere_cen_nc_calculator() : per_residue_solvent_exposure.cc
• sphere_FA_nc_anyatom_calculator() : per_residue_solvent_exposure.cc
• sphere_FA_nc_calculator() : per_residue_solvent_exposure.cc
• SphereGrinder() : spheregrinder.cc
• sqr() : make_motif_tables.cc
• ss_ds_ts_assign_test() : rna_design.cc
• statistics() : design_contrast_and_statistic.cc
• stepwise_monte_carlo() : stepwise.cc
• stepwise_monte_carlo_legacy() : stepwise.cc
• store_energies() : ddg_benchmark.cc
• strerror_r() : format.cc
• strerror_s() : format.cc
• SUCCESS() : test_carbohydrate_scoring.cc , dock_glycans.cc , test_CarbohydrateInfo.cc
• sum() : ddg_benchmark.cc
• superimpose() : ensemble_analysis.cc
• superimpose_pdb() : rna_graft.cc
• svm_binary_svc_probability() : Svm.cc
• svm_check_parameter() : Svm.cc , Svm.hh
• svm_check_probability_model() : Svm.cc , Svm.hh
• svm_cross_validation() : Svm.cc , Svm.hh
• svm_destroy_param() : Svm.hh , Svm.cc
• svm_free_and_destroy_model() : Svm.cc , Svm.hh
• svm_free_model_content() : Svm.hh , Svm.cc
• svm_get_labels() : Svm.cc , Svm.hh
• svm_get_nr_class() : Svm.hh , Svm.cc
• svm_get_nr_sv() : Svm.hh , Svm.cc
• svm_get_sv_indices() : Svm.hh , Svm.cc
• svm_get_svm_type() : Svm.cc , Svm.hh
• svm_get_svr_probability() : Svm.cc , Svm.hh
• svm_group_classes() : Svm.cc
• svm_load_model() : Svm.cc , Svm.hh
• svm_predict() : Svm.cc , Svm.hh
• svm_predict_probability() : Svm.cc , Svm.hh
• svm_predict_values() : Svm.cc , Svm.hh
• svm_save_model() : Svm.hh , Svm.cc
• svm_set_print_string_function() : Svm.hh , Svm.cc
• svm_svr_probability() : Svm.cc
• svm_train() : Svm.cc , Svm.hh
• svm_train_one() : Svm.cc
• swa_rna_cluster() : swa_rna_main.cc
• swa_rna_sample() : swa_rna_main.cc
• swap() : Svm.cc