Here is a list of all file members with links to the files they belong to:

- r -

• rad2deg : bridgeObjects.cc
• RANDOM_DECOY_SIZE_FOR_THRESHOLD : calibur.cc
• randomly_open_pose_loop() : test_CCD_loop_closure.cc
• RBF : Svm.hh
• read_fasta() : helix_from_sequence.cc
• read_in_flexible_regions() : incorporate_motifs.cc
• read_in_mutations() : ddg_monomer.cc , cartesian_ddg.cc
• read_in_pdbs() : ResidueDisorder.cc
• read_input_weights() : ensemble_analysis.cc , fast_clustering.cc
• read_library_simple() : iterhybrid_selector.cc
• read_library_w_simpose() : iterhybrid_selector.cc
• read_membrane() : helix_from_sequence.cc
• read_native_sequence_for_entity_elements() : mpi_msd.cc
• read_pose() : mp_span_from_pdb.cc , mutate.cc
• read_rama_map_file() : torsional_potential_corrections.cc
• read_silent_input_as_library() : iterhybrid_selector.cc
• read_structures() : ensemble_analysis.cc , fast_clustering.cc
• read_thickness() : mp_span_from_pdb.cc
• ReadCAsFromPDB() : denovo_density.cc
• readline() : Svm.cc
• readPDBcoords() : density_tools.cc
• real_command_line_argc : performance_benchmark.cc
• real_command_line_argv : performance_benchmark.cc
• reavrg() : avrg_silent.cc
• rebuild_test() : swa_protein_main.cc
• recenter_with_missing() : ca_to_allatom.cc
• reduce_fa_rep() : minimize_with_cst.cc , ensemble_generator_score12_sidechain_ver2.cc
• register_options() : rotamer_recovery.cc , cst_info.cc , ensemble_analysis.cc , fast_clustering.cc , antibody_numbering_converter.cc , fragment_picker.cc , idealize_jd2.cc , r_noe_assign.cc , remodel.cc , struc_set_fragment_picker.cc
• relax_with_restraints_on_constres() : avrg_silent.cc
• remove_dashes() : rna_thread.cc , rna_thread_and_minimize.cc
• remove_pep_res() : pepspec.cc
• repack_test() : beta_peptide_modeling.cc
• repackmin_iterations : zinc2_homodimer_design.cc
• report() : avrg_silent.cc
• report_and_dump() : iterhybrid_selector.cc
• res : calibur.cc
• resample_full_model() : erraser2.cc
• resample_full_model_test() : resample_full_model.cc
• residues_too_distant() : rna_design.cc
• restore_hack() : fast_gap.cc , full_length_model.cc
• results_filename : performance_benchmark.cc
• retag() : iterhybrid_selector.cc
• reverse_convert() : multistage_rosetta_scripts.cc , reverse_conversion_util.hh
• rhiju_pdbstats() : rna_features.cc
• RmsfMoverCOP : ensemble_analysis.cc
• RmsfMoverOP : ensemble_analysis.cc
• rna_build_helix_test() : rna_helix.cc
• rna_denovo() : rna_denovo.cc
• rna_denovo_legacy() : rna_denovo.cc
• rna_design_test() : rna_design.cc
• rna_features_from_pose() : rna_features.cc
• rna_fullatom_minimize_test() : rna_minimize.cc
• rna_motif_test() : rna_motif.cc
• rna_sample_virtual_sugar() : swa_rna_main.cc
• rna_score_test() : rna_score.cc
• rna_sequence_recovery_metrics() : rna_design.cc
• rna_suitename() : rna_suitename.cc
• rna_superimpose_and_graft_test() : rna_graft.cc
• rna_thread_test() : rna_thread.cc
• rot : homodimer_design.cc
• round() : ensemble_analysis.cc
• round_minimized_namer() : erraser2.cc
• round_resampled_namer() : erraser2.cc
• run() : struc_set_fragment_picker.cc , r_noe_assign.cc , ensemble_analysis.cc , fast_clustering.cc
• run_mc() : ensemble_generator_score12_sidechain_ver2.cc
• run_old() : r_noe_assign.cc
• run_pep_prep() : pepspec_anchor_dock.cc
• RunPepSpec() : pepspec.cc
• runtime_assert : exit.hh
• runtime_assert_msg : exit.hh
• runtime_assert_string_msg : exit.hh