rotamer_recovery.cc File Reference

#include <protocols/jd2/JobDistributor.hh>
#include <protocols/rotamer_recovery/RotamerRecoveryMover.hh>
#include <protocols/rotamer_recovery/RotamerRecovery.hh>
#include <protocols/rotamer_recovery/RotamerRecoveryFactory.hh>
#include <devel/init.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/packing.OptionKeys.gen.hh>
#include <basic/options/option_macros.hh>
#include <basic/Tracer.hh>
#include <core/import_pose/import_pose.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/task/operation/TaskOperations.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <utility/excn/EXCN_Base.hh>
#include <utility/excn/Exceptions.hh>
#include <utility/exit.hh>
#include <utility/vector0.hh>
#include <utility/vector1.hh>
#include <fstream>

Functions
void	register_options ()
int	main (int argc, char *argv[])

Variables
static Tracer	TR ("apps.benchmark.scientific.rotamer_recovery")

Function Documentation

int main	(	int	argc,
		char *	argv[]
	)

References utility::io::oc::cout, basic::Tracer::Error, basic::options::OptionKeys::in::file::file, pyrosetta::get_score_function, utility::options::OptionCollection::has(), devel::init(), utility::excn::EXCN_Base::msg(), basic::options::option, options, basic::options::OptionKeys::canonical_sampling::out::out, basic::options::OptionKeys::docking::ligand::protocol, register_options(), basic::options::OptionKeys::packing::resfile, sequence_recovery::rotamer_recovery, utility::excn::EXCN_Base::show(), basic::options::TR(), basic::options::OptionKeys::inout::dbms::user, utility_exit, and value.

void register_options

(

)

References basic::options::OptionKeys::in::file::l, basic::options::OptionKeys::in::file::native, NEW_OPT, OPT, options, basic::options::OptionKeys::docking::ligand::protocol, basic::options::OptionKeys::packing::resfile, sequence_recovery::rotamer_recovery, basic::options::OptionKeys::in::file::s, basic::options::OptionKeys::in::file::silent, and basic::options::OptionKeys::packing::use_input_sc.

Referenced by main(), and my_main().

Variable Documentation

Tracer TR("apps.benchmark.scientific.rotamer_recovery")

static

Referenced by PerformanceBenchmark::execute(), PerformanceBenchmark::executeAllBenchmarks(), PerformanceBenchmark::executeOneBenchmark(), main(), ScoreEachBenchmark::run(), ScoreEachBenchmark::run_long_ranged_two_body_energy(), ScoreEachBenchmark::run_one_body_energy(), ScoreEachBenchmark::run_short_ranged_two_body_energy(), and ScoreEachBenchmark::setUp().