enzyme_design.cc File Reference

#include <protocols/enzdes/EnzdesFixBBProtocol.hh>
#include <protocols/enzdes/EnzdesFlexBBProtocol.hh>
#include <protocols/enzdes/enzdes_util.hh>
#include <protocols/enzdes/EnzFilters.hh>
#include <devel/init.hh>
#include <core/types.hh>
#include <basic/options/option.hh>
#include <core/pose/Pose.hh>
#include <core/pose/datacache/CacheableDataType.hh>
#include <basic/Tracer.hh>
#include <basic/datacache/CacheableString.hh>
#include <protocols/toolbox/match_enzdes_util/EnzConstraintIO.hh>
#include <protocols/jobdist/standard_mains.hh>
#include <protocols/jobdist/JobDistributors.hh>
#include <utility/string_util.hh>
#include <core/io/silent/SilentStruct.hh>
#include <core/io/silent/ScoreFileSilentStruct.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/run.OptionKeys.gen.hh>
#include <basic/options/keys/enzdes.OptionKeys.gen.hh>
#include <core/io/silent/SilentFileData.hh>
#include <utility/vector1.hh>
#include <utility/file/file_sys_util.hh>
#include <basic/datacache/BasicDataCache.hh>
#include <utility/excn/Exceptions.hh>

Functions
static THREAD_LOCAL basic::Tracer	tr ("apps.public.enzdes.enzyme_design")
int	main (int argc, char *argv[])

Detailed Description

Author

Florian Richter (flori.nosp@m.c@u..nosp@m.washi.nosp@m.ngto.nosp@m.n.edu)

Function Documentation

int main	(	int	argc,
		char *	argv[]
	)

References utility::options::OptionCollection::add_relevant(), utility::file::FileName::base(), utility::io::oc::cout, basic::options::OptionKeys::enzdes::cstfile, app.delta_score_per_mutation::data, basic::options::OptionKeys::enzdes::dump_final_repack_without_ligand_pdb, basic::options::OptionKeys::enzdes::enz_score, utility::file::file_delete(), utility::file::file_exists(), basic::options::OptionKeys::enzdes::final_repack_without_ligand, basic::options::OptionKeys::enzdes::flexbb_protocol, devel::init(), utility::excn::EXCN_Base::msg(), out::nooutput(), local::nstruct, basic::options::OptionKeys::out::file::o, basic::options::option, option, options, basic::options::OptionKeys::out::overwrite, basic::options::OptionKeys::out::prefix, basic::options::OptionKeys::antibody::prefix, basic::options::OptionKeys::run::preserve_header, basic::options::OptionKeys::enzdes::process_ligrot_separately, register_options(), basic::options::OptionKeys::out::file::scorefile, basic::options::OptionKeys::mh::match::ss, basic::options::OptionKeys::out::suffix, utility::to_string(), tr(), basic::options::OptionKeys::inout::dbms::user, and basic::Warning().

static THREAD_LOCAL basic::Tracer tr ( "apps.public.enzdes.enzyme_design"  )

static

Referenced by main().