- c -

• ca_to_allatom_main() : ca_to_allatom.cc
• calc_rms_test() : swa_protein_main.cc
• calc_scores() : torsional_potential_corrections.cc
• calculate_burial() : batch_distances.cc , template_features.cc
• calculate_pairwise_RMSD() : swa_rna_util.cc
• calculate_res_map() : rna_graft.cc
• calpha_pdb_superimpose_pose() : minimize_ppi.cc
• check_alignment_RMSD_cutoff() : swa_rna_util.cc
• check_for_contacts() : rna_database.cc
• check_for_contacts_and_output_jump_o2prime() : rna_database.cc
• check_for_contacts_and_output_jump_phosphate() : rna_database.cc
• check_option_conflicts() : remodel.cc
• check_required_options() : remodel.cc
• clone() : Svm.cc
• close_chain_breaks() : cs_rosetta_rna.cc
• close_loops() : rna_graft.cc
• cluster_outfile_test() : swa_protein_main.cc
• cluster_test() : rna_cluster.cc
• cmpscnd() : sequence_tolerance.cc
• CommonHelp() : binder.cpp
• composite_sequences_from_cmd_line() : score_aln2.cc
• compute_chem_shift_RMSD() : cs_rosetta_rna.cc
• core_init_from_string() : init_util.hh
• core_init_with_additional_options() : init_util.hh
• correct_dunbrack() : torsional_potential_corrections.cc
• correlation() : ddg_benchmark.cc
• correlation_coefficient() : ddg_benchmark.cc
• create_base_pair_step_database_test() : rna_database.cc
• create_bp_jump_database_test() : rna_database.cc
• create_ClassicFragmentMover() : _abinitio__by_hand_beginning.cc
• create_ClassicFragmentMover_CL() : _abinitio__by_hand_beginning.cc
• create_cs_rosetta_rna_scorefxn() : cs_rosetta_rna.cc
• create_ensemble() : ensemble_generator_score12_sidechain_ver2.cc
• create_pseudo_commandline() : init_util.hh
• create_rna_vall_torsions_test() : rna_database.cc
• create_scorefxn() : swa_rna_util.cc
• create_scoring_function() : _scoring__by_hand_beginning.cc
• create_scoring_function_ws_patch() : _scoring__by_hand_beginning.cc
• create_theozyme_pdb() : CstfileToTheozymePDB.cc
• cs_rosetta_rna_pdb() : cs_rosetta_rna.cc