- i -

• identify_targeted_positions() : incorporate_motifs.cc
• import_and_dump_pdb() : swa_rna_util.cc
• info() : Svm.cc
• init_usage_prompt() : sequence_recovery.cc , remodel.cc
• initialize_native_pose() : swa_protein_main.cc
• initialize_peptide() : pepspec.cc
• instantiate_numeric_containers() : _numeric__by_hand_ending.cc
• instantiate_numeric_functions() : _numeric__by_hand_ending.cc
• instantiate_real_numeric_containers() : _numeric__by_hand_ending.cc
• interface_residue_ddg() : pocket_suggest_target_residues_by_ddg.cc
• interface_rmsd() : minimize_ppi.cc
• is_deletable() : ResidueType.bench.hh
• is_interface_heavyatom() : minimize_ppi.cc
• is_interface_residue() : pocket_suggest_target_residues_by_ddg.cc
• is_semi_rot() : torsional_potential_corrections.cc
• is_subset() : rna_graft.cc
• isBoundary() : design_contrast_and_statistic.cc
• isBuried() : design_contrast_and_statistic.cc
• isHydroNonPolar() : design_contrast_and_statistic.cc
• isNegative() : design_contrast_and_statistic.cc
• isPolarUncharge() : design_contrast_and_statistic.cc
• isPositive() : design_contrast_and_statistic.cc