- s -

• sat_allow : exposed_strand_finder.cc
• scaffold_pdb : zinc1_homodimer_setup.cc
• Score_ : performance_benchmark.cc
• Score_analytic_etable_fa_atr_ : ScoreAnalyticEtable.bench.hh
• Score_analytic_etable_fa_intra_atr_ : ScoreAnalyticEtable.bench.hh
• Score_analytic_etable_fa_intra_rep_ : ScoreAnalyticEtable.bench.hh
• Score_analytic_etable_fa_intra_sol_ : ScoreAnalyticEtable.bench.hh
• Score_analytic_etable_fa_rep_ : ScoreAnalyticEtable.bench.hh
• Score_analytic_etable_fa_sol_ : ScoreAnalyticEtable.bench.hh
• Score_cart_bonded_ : ScoreEach.bench.hh
• Score_cbeta_ : ScoreEach.bench.hh
• Score_cbeta_smooth_ : ScoreEach.bench.hh
• Score_cen_env_smooth_ : ScoreEach.bench.hh
• Score_cen_pair_smooth_ : ScoreEach.bench.hh
• Score_cenpack_ : ScoreEach.bench.hh
• Score_cenpack_smooth_ : ScoreEach.bench.hh
• Score_ch_bond_ : ScoreEach.bench.hh
• Score_chainbreak_ : ScoreEach.bench.hh
• Score_co_ : ScoreEach.bench.hh
• Score_distance_chainbreak_ : ScoreEach.bench.hh
• Score_dslf_ca_dih_ : ScoreEach.bench.hh
• Score_dslf_cbs_ds_ : ScoreEach.bench.hh
• Score_dslf_cs_ang_ : ScoreEach.bench.hh
• Score_dslf_fa13_ : ScoreEach.bench.hh
• Score_dslf_ss_dih_ : ScoreEach.bench.hh
• Score_dslf_ss_dst_ : ScoreEach.bench.hh
• Score_e_pH_ : ScoreEach.bench.hh
• Score_env_ : ScoreEach.bench.hh
• Score_envsmooth_ : ScoreEach.bench.hh
• Score_fa_atr_ : ScoreEach.bench.hh
• Score_fa_cust_pair_dist_ : ScoreEach.bench.hh
• Score_fa_dun_ : ScoreEach.bench.hh
• Score_fa_dun_dev_ : ScoreEach.bench.hh
• Score_fa_dun_rot_ : ScoreEach.bench.hh
• Score_fa_dun_semi_ : ScoreEach.bench.hh
• Score_fa_elec_ : ScoreEach.bench.hh
• Score_fa_intra_atr_ : ScoreEach.bench.hh
• Score_fa_intra_rep_ : ScoreEach.bench.hh
• Score_fa_intra_sol_ : ScoreEach.bench.hh
• Score_fa_pair_ : ScoreEach.bench.hh
• Score_fa_pair_aro_aro_ : ScoreEach.bench.hh
• Score_fa_pair_aro_pol_ : ScoreEach.bench.hh
• Score_fa_pair_pol_pol_ : ScoreEach.bench.hh
• Score_fa_rep_ : ScoreEach.bench.hh
• Score_fa_sol_ : ScoreEach.bench.hh
• Score_gauss_ : ScoreEach.bench.hh
• Score_gb_elec_ : ScoreEach.bench.hh
• Score_h2o_hbond_ : ScoreEach.bench.hh
• Score_hbond_bb_sc_ : ScoreEach.bench.hh
• Score_hbond_lr_bb_ : ScoreEach.bench.hh
• Score_hbond_lr_bb_sc_ : ScoreEach.bench.hh
• Score_hbond_sc_ : ScoreEach.bench.hh
• Score_hbond_sr_bb_ : ScoreEach.bench.hh
• Score_hbond_sr_bb_sc_ : ScoreEach.bench.hh
• Score_hs_pair_ : ScoreEach.bench.hh
• Score_linear_chainbreak_ : ScoreEach.bench.hh
• Score_lk_costheta_ : ScoreEach.bench.hh
• Score_lk_nonpolar_ : ScoreEach.bench.hh
• Score_lk_polar_ : ScoreEach.bench.hh
• Score_mm_bend_ : ScoreEach.bench.hh
• Score_mm_lj_intra_atr_ : ScoreEach.bench.hh
• Score_mm_lj_intra_rep_ : ScoreEach.bench.hh
• Score_mm_stretch_ : ScoreEach.bench.hh
• Score_mm_twist_ : ScoreEach.bench.hh
• Score_neigh_vect_ : ScoreEach.bench.hh
• Score_occ_sol_exact_ : ScoreEach.bench.hh
• Score_occ_sol_fitted_ : ScoreEach.bench.hh
• Score_occ_sol_fitted_onebody_ : ScoreEach.bench.hh
• Score_omega_ : ScoreEach.bench.hh
• Score_overlap_chainbreak_ : ScoreEach.bench.hh
• Score_p_aa_ : ScoreEach.bench.hh
• Score_p_aa_pp_ : ScoreEach.bench.hh
• Score_pack_stat_ : ScoreEach.bench.hh
• Score_pair_ : ScoreEach.bench.hh
• Score_pro_close_ : ScoreEach.bench.hh
• Score_rama2b_ : ScoreEach.bench.hh
• Score_rama_ : ScoreEach.bench.hh
• Score_ref_ : ScoreEach.bench.hh
• Score_ref_nc_ : ScoreEach.bench.hh
• Score_rg_ : ScoreEach.bench.hh
• Score_rsigma_ : ScoreEach.bench.hh
• Score_sa_ : ScoreEach.bench.hh
• Score_sheet_ : ScoreEach.bench.hh
• Score_ss_pair_ : ScoreEach.bench.hh
• Score_unfolded_ : ScoreEach.bench.hh
• Score_vdw_ : ScoreEach.bench.hh
• Score_yhh_planarity_ : ScoreEach.bench.hh
• ShearMover_ : performance_benchmark.cc
• sheet_start : homodimer_maker.cc
• sheet_stop : homodimer_maker.cc
• skip_hd_docking : homodimer_design.cc
• SmallMover_ : performance_benchmark.cc
• strand_span : exposed_strand_finder.cc
• struct_file : exposed_strand_finder.cc , homodimer_maker.cc
• svm_print_string : Svm.cc
• svm_type_table : Svm.cc