- u -

UBQ2_lys : basic::options::OptionKeys::chemically_conjugated_docking
UBQ2_pdb : basic::options::OptionKeys::chemically_conjugated_docking
UBQpdb : basic::options::OptionKeys::chemically_conjugated_docking
ufv : basic::options::OptionKeys::ufv
ufv_loops : basic::options::OptionKeys::ufv
uint64_p : utility::json_spirit
ULongLong : fmt
ulr_mulfactor : basic::options::OptionKeys::lh
unbound_mode : basic::options::OptionKeys::AnchoredDesign
unboundrot : basic::options::OptionKeys::packing
unfolded_energies_file : basic::options::OptionKeys::unfolded_state
unfolded_state : basic::options::OptionKeys::unfolded_state
unicode : app::pyrosetta_toolkit::modules::prettytable::prettytable
uniform_trans : basic::options::OptionKeys::docking
uniformfrag : basic::options::OptionKeys::mh::filter
unmask_bb : basic::options::OptionKeys::edensity
unmodifypot : basic::options::OptionKeys::score
unmute : basic::options::OptionKeys::out
update_pymol_on_conformation_changes_only : basic::options::OptionKeys::run
update_pymol_on_energy_changes_only : basic::options::OptionKeys::run
updown_collision_tolerance : basic::options::OptionKeys::match
updown_residue_collision_score_cutoff : basic::options::OptionKeys::match
updown_residue_collision_Wfa_atr : basic::options::OptionKeys::match
updown_residue_collision_Wfa_rep : basic::options::OptionKeys::match
updown_residue_collision_Wfa_sol : basic::options::OptionKeys::match
upstream_residue_collision_score_cutoff : basic::options::OptionKeys::match
upstream_residue_collision_tolerance : basic::options::OptionKeys::match
upstream_residue_collision_Wfa_atr : basic::options::OptionKeys::match
upstream_residue_collision_Wfa_rep : basic::options::OptionKeys::match
upstream_residue_collision_Wfa_sol : basic::options::OptionKeys::match
upweight_interface : basic::options::OptionKeys::pepspec
url : app::pyrosetta_toolkit::modules::prettytable::setup
use_1jj2_torsions : basic::options::OptionKeys::rna::farna
use_2prime_OH_potential : basic::options::OptionKeys::score
use_aa1 : basic::options::OptionKeys::mh::score
use_aa2 : basic::options::OptionKeys::mh::score
use_ambig_constraints : basic::options::OptionKeys::docking::ligand
use_bicubic_interpolation : basic::options::OptionKeys::corrections::score
use_blueprint_sequence : basic::options::OptionKeys::remodel
use_cart_relax : basic::options::OptionKeys::remodel
use_cen_score : basic::options::OptionKeys::flexPepDocking
use_clusters : basic::options::OptionKeys::remodel
use_compact_residue_schema : basic::options::OptionKeys::inout::dbms
use_DARC_gpu : basic::options::OptionKeys::fingerprint
use_database : basic::options::OptionKeys::in , basic::options::OptionKeys::out
use_electrostatic_repulsion : basic::options::OptionKeys::packing
use_ellipsoidal_randomization : basic::options::OptionKeys::docking
use_epitope_constraints : basic::options::OptionKeys::antibody::design
use_filters : basic::options::OptionKeys::abinitio
use_first_jump_for_submotif : basic::options::OptionKeys::stepwise::monte_carlo
use_fraglib : basic::options::OptionKeys::loodo
use_fraglibsc : basic::options::OptionKeys::loodo
use_fullmer : basic::options::OptionKeys::ufv
use_gen_kirkwood : basic::options::OptionKeys::score
use_general_protocol : basic::options::OptionKeys::loopfcst
use_green_packer : basic::options::OptionKeys::stepwise
use_gzip : basic::options::OptionKeys::ProQ
use_H3_graft_outliers : basic::options::OptionKeys::antibody::design
use_hierarchical_clustering : basic::options::OptionKeys::canonical_sampling::probabilities
use_input_bb : basic::options::OptionKeys::pepspec
use_input_sc : basic::options::OptionKeys::packing
use_legacy_protocol : basic::options::OptionKeys::docking
use_legacy_setup : basic::options::OptionKeys::rna::farna
use_light_chain_type : basic::options::OptionKeys::antibody::design
use_log : basic::options::OptionKeys::mh::score
use_loop_hash : basic::options::OptionKeys::remodel::RemodelLoopMover
use_loophash_filter : basic::options::OptionKeys::abinitio
use_mean_cluster_cst_data : basic::options::OptionKeys::antibody
use_occurrence_data : basic::options::OptionKeys::out::file
use_on_repack : basic::options::OptionKeys::patterson
use_only_H3_kinked : basic::options::OptionKeys::antibody::design
use_outliers : basic::options::OptionKeys::antibody::design
use_packer_instead_of_rotamer_trials : basic::options::OptionKeys::stepwise::protein
use_pdb_format_HETNAM_records : basic::options::OptionKeys::out::file
use_polarization : basic::options::OptionKeys::score
use_pose_relax : basic::options::OptionKeys::remodel
use_precomputed_library : basic::options::OptionKeys::stepwise::monte_carlo
use_rama_filter : basic::options::OptionKeys::cyclic_peptide
use_rotamer_constraints_to_native : basic::options::OptionKeys::ddg
use_same_length_fragments : basic::options::OptionKeys::remodel
use_spline_interpolation : basic::options::OptionKeys::patterson
use_ss1 : basic::options::OptionKeys::mh::score
use_ss2 : basic::options::OptionKeys::mh::score
use_template_sequence : basic::options::OptionKeys::DenovoProteinDesign
use_template_topology : basic::options::OptionKeys::DenovoProteinDesign
use_terminal_residues : basic::options::OptionKeys::make_rot_lib
use_time_as_seed : basic::options::OptionKeys::run
use_truncated_termini : basic::options::OptionKeys::in
use_unrelaxed_starting_points : basic::options::OptionKeys::cp
user : basic::options::OptionKeys::inout::dbms , utility::options::OptionKeys::options
user_set_alpha_dihedral_perturbation : basic::options::OptionKeys::cyclic_peptide
user_set_alpha_dihedrals : basic::options::OptionKeys::cyclic_peptide
user_tag : basic::options::OptionKeys::out
user_tags : basic::options::OptionKeys::in::file
useZ : basic::options::OptionKeys::csa , basic::options::OptionKeys::dc