- h -

• h1_template : basic::options::OptionKeys::antibody
• h2_template : basic::options::OptionKeys::antibody
• h3_filter : basic::options::OptionKeys::antibody
• h3_filter_tolerance : basic::options::OptionKeys::antibody
• h3_no_stem_graft : basic::options::OptionKeys::antibody
• h3_template : basic::options::OptionKeys::antibody
• h_mode : basic::options::OptionKeys::holes
• harmonic_ca_tether : basic::options::OptionKeys::ddg
• harmonic_Calphas : basic::options::OptionKeys::docking::ligand
• harmonic_torsions : basic::options::OptionKeys::docking::ligand
• Haro : basic::options::OptionKeys::orbitals
• harvest : basic::options::OptionKeys::mh::harvest
• harvest_motifs : basic::options::OptionKeys::mh
• harvest_motifs_min_hh_ends : basic::options::OptionKeys::mh
• harvest_scores : basic::options::OptionKeys::mh
• hash_2D_vs_3D : basic::options::OptionKeys::sicdock
• hash_angle_resl : basic::options::OptionKeys::mh::harvest
• hash_cart_resl : basic::options::OptionKeys::mh::harvest
• hash_tag_only_terminal_Es : basic::options::OptionKeys::sewing
• hashfile : basic::options::OptionKeys::hotspot
• hb_acc_strength : basic::options::OptionKeys::score
• hb_bb : basic::options::OptionKeys::mh::filter
• hb_bb_sc : basic::options::OptionKeys::mh::filter
• hb_cen_soft : basic::options::OptionKeys::corrections::score
• hb_don_strength : basic::options::OptionKeys::score
• hb_env_dep_new : basic::options::OptionKeys::score
• hb_env_dep_new_high_nneigh : basic::options::OptionKeys::score
• hb_env_dep_new_low_nneigh : basic::options::OptionKeys::score
• hb_env_dep_new_low_scale : basic::options::OptionKeys::score
• hb_fade_energy : basic::options::OptionKeys::corrections::score
• hb_filter : basic::options::OptionKeys::flexPepDocking
• hb_lrbb : basic::options::OptionKeys::remodel
• hb_sc : basic::options::OptionKeys::mh::filter
• hb_score_cutoff : basic::options::OptionKeys::motifs
• hb_sp2_BAH180_rise : basic::options::OptionKeys::corrections::score
• hb_sp2_chipen : basic::options::OptionKeys::corrections::score
• hb_sp2_outer_width : basic::options::OptionKeys::corrections::score
• hb_srbb : basic::options::OptionKeys::remodel
• hbe_for_dH2O_aGEN_SP3SC_ssother : basic::options::OptionKeys::score
• hbond : basic::options::OptionKeys::mp::scoring
• hbond_acceptor_energy_cutoff : basic::options::OptionKeys::cyclic_peptide
• hbond_bb_per_residue_energy : basic::options::OptionKeys::score
• Hbond_depth_correction : basic::options::OptionKeys::mp
• hbond_disable_bbsc_exclusion_rule : basic::options::OptionKeys::score
• hbond_energy_cutoff : basic::options::OptionKeys::cyclic_peptide
• hbond_energy_shift : basic::options::OptionKeys::corrections::score
• hbond_max_threshold : basic::options::OptionKeys::motifs
• hbond_measure_sp3acc_BAH_from_hvy : basic::options::OptionKeys::corrections::score
• hbond_min_threshold : basic::options::OptionKeys::motifs
• hbond_params : basic::options::OptionKeys::score
• hbond_set : test::T200_Scoring , test::Workshop3test
• hbond_sp2_correction : basic::options::OptionKeys::corrections
• hbs_design_positions : hbs_design
• HCF : basic::options::OptionKeys::testing
• HDX : basic::options::OptionKeys::in::file
• Header : make_templates
• heat : basic::options::OptionKeys::rna::farna
• heat_convergence_check : basic::options::OptionKeys::mc
• helical_movement_params : basic::options::OptionKeys::RBSegmentRelax
• helical_omega : basic::options::OptionKeys::remodel
• helical_radius : basic::options::OptionKeys::remodel
• helical_rise : basic::options::OptionKeys::remodel
• helix_end : basic::options::OptionKeys::mp::benchmark::ideal_helix
• helix_pairings : basic::options::OptionKeys::templates
• helix_start : basic::options::OptionKeys::mp::benchmark::ideal_helix
• help : app::delta_score_per_mutation , app::pyrosetta_toolkit::modules::DesignBreakdown , demo::D010_Pose_structure , demo::D020_Pose_scoring , demo::D030_Fold_tree , demo::D040_Movemap , demo::D050_Packer_task , demo::D060_Folding , demo::D070_Refinement , demo::D080_Loop_modeling , demo::D090_Ala_scan , demo::D100_Docking , demo::D110_DNA_interface , demo::D120_Ligand_interface , setup_pyrosetta , toolbox::adjust_library_path , utility::options::OptionKeys
• hetatm_list : clean_pdb_keep_ligand
• hh_map : basic::options::OptionKeys::cm
• hierarchical_pool : basic::options::OptionKeys::mc
• high_hbond_weight_multiplier : basic::options::OptionKeys::cyclic_peptide
• high_min_patch : basic::options::OptionKeys::docking
• high_patch : basic::options::OptionKeys::docking
• holes : basic::options::OptionKeys::holes
• homo_file : basic::options::OptionKeys::lh
• homodimer : basic::options::OptionKeys::willmatch
• homol_csts : basic::options::OptionKeys::pepspec
• host : basic::options::OptionKeys::inout::dbms
• hotspot : basic::options::OptionKeys::hotspot
• hotspot_filter : basic::options::OptionKeys::flexPepDocking
• hotspot_hash : basic::options::OptionKeys::cluster
• HP : amino_acids
• hpcg : amino_acids
• Hpol : basic::options::OptionKeys::orbitals
• hset : test::Workshop3test
• hterm2 : test::T250_Constraints
• hxl_dist_cutoff : basic::options::OptionKeys::bunsat_calc2
• hybridize : basic::options::OptionKeys::cm::hybridize
• hydrate : basic::options::OptionKeys::magnesium
• hydrophobic_polar_pattern : basic::options::OptionKeys::DenovoProteinDesign