david_darc_multirun.cc File Reference

#include <iostream>
#include <iomanip>
#include <fstream>
#include <ostream>
#include <string>
#include <sstream>
#include <cmath>
#include <map>
#include <devel/init.hh>
#include <protocols/pockets/Fingerprint.hh>
#include <protocols/pockets/PocketGrid.hh>
#include <core/optimization/ParticleSwarmMinimizer.hh>
#include <basic/options/option_macros.hh>
#include <protocols/pockets/FingerprintMultifunc.hh>
#include <core/conformation/Residue.hh>
#include <core/init/init.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <core/pose/PDBInfo.hh>
#include <basic/Tracer.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <core/conformation/Conformation.hh>
#include <basic/options/util.hh>
#include <basic/options/after_opts.hh>
#include <core/id/AtomID.hh>
#include <core/id/AtomID_Map.hh>
#include <numeric/conversions.hh>
#include <numeric/xyz.functions.hh>
#include <numeric/xyzMatrix.hh>
#include <numeric/model_quality/rms.hh>
#include <numeric/model_quality/maxsub.hh>
#include <ObjexxFCL/FArray1D.hh>
#include <ObjexxFCL/FArray2D.hh>
#include <core/scoring/rms_util.hh>
#include <core/scoring/rms_util.tmpl.hh>
#include <utility/vector1.hh>
#include <utility/io/ozstream.hh>
#include <core/import_pose/import_pose.hh>
#include <protocols/simple_moves/SuperimposeMover.hh>
#include <utility/excn/Exceptions.hh>

Functions
Real	calpha_pdb_superimpose_pose (pose::Pose &mod_pose, pose::Pose const &ref_pose)
int	main (int argc, char *argv[])

Function Documentation

calpha_pdb_superimpose_pose()

Real calpha_pdb_superimpose_pose	(	pose::Pose &	mod_pose,
		pose::Pose const &	ref_pose
	)

References utility::io::oc::cout, create_a3b_hbs::ii, beta_nonlocal::jj, and superimpose_pose().

Referenced by main().

main()

int main	(	int	argc,
		char *	argv[]
	)

References oop_conformations::angles, argv, utility::vectorL< L, T, A >::at(), create_a3b_hbs::best_pose, calpha_pdb_superimpose_pose(), basic::options::OptionKeys::pocket_grid::central_relax_pdb_num, predPRE::chain, utility::io::oc::cout, test.T009_Exceptions::e, basic::options::OptionKeys::score::empty, utility::options::OptionKeys::options::exit, create_a3b_hbs::f, fprintf(), getline(), create_a3b_hbs::i, basic::init(), ObjexxFCL::int_of(), create_a3b_hbs::j, lig_res_num, NEW_OPT, option, drrafter_rna::output_tag, kmeans_adaptive_kernel_density_bb_dependent_rotlib::p, numeric::constants::r::pi_2, pyrosetta.distributed.io::pose_from_file, erraser_util::remove(), predPRE::resnum, loops_kic::rms, basic::options::start_files(), tag, basic::options::OptionKeys::in::file::template_pdb, numeric::random::uniform(), kmeans_adaptive_kernel_density_bb_dependent_rotlib::v, x, numeric::xyzVector< T >::x(), numeric::x_rotation_matrix_radians(), predPRE::y, numeric::xyzVector< T >::y(), numeric::y_rotation_matrix_radians(), predPRE::z, numeric::xyzVector< T >::z(), and numeric::z_rotation_matrix_radians().