HelixAssemblyDesigner.cc File Reference

#include <core/pack/task/TaskFactory.hh>
#include <core/pack/task/operation/TaskOperations.hh>
#include <core/pack/rotamer_set/AddResiduesRotamerSetOperation.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/fragment/FragSet.hh>
#include <core/fragment/FragmentIO.hh>
#include <core/fragment/FragSetCollection.hh>
#include <core/scoring/methods/EnergyMethodOptions.hh>
#include <core/pose/Pose.hh>
#include <devel/init.hh>
#include <protocols/sewing/DeleteAllRotamerSetOperation.hh>
#include <protocols/sewing/NativeResidueReader.hh>
#include <protocols/sewing/BridgeFragmentMover.hh>
#include <protocols/sewing/LoopCreationMover.hh>
#include <protocols/minimization_packing/MinPackMover.hh>
#include <protocols/minimization_packing/PackRotamersMover.hh>
#include <protocols/minimization_packing/symmetry/SymPackRotamersMover.hh>
#include <protocols/minimization_packing/MinMover.hh>
#include <protocols/minimization_packing/TaskAwareMinMover.hh>
#include <protocols/moves/MoverContainer.hh>
#include <protocols/symmetry/SetupForSymmetryMover.hh>
#include <protocols/loops/Loops.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <basic/options/util.hh>
#include <basic/options/keys/run.OptionKeys.gen.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/lh.OptionKeys.gen.hh>
#include <basic/options/keys/loops.OptionKeys.gen.hh>
#include <basic/options/keys/packing.OptionKeys.gen.hh>
#include <utility/io/izstream.hh>
#include <utility/exit.hh>

Namespaces
	HelixAssemblyDesigner

Functions
int	main (int argc, char *argv[])

Variables
basic::options::IntegerOptionKey const	HelixAssemblyDesigner::num_residues_to_match ("num_residues_to_match")
basic::options::IntegerOptionKey const	HelixAssemblyDesigner::num_helices_in_repeat ("num_helices_in_repeat")
basic::options::BooleanOptionKey const	HelixAssemblyDesigner::autodetect_loops ("autodetect_loops")
basic::options::FileOptionKey const	HelixAssemblyDesigner::native_residue_file ("native_residue_file")

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, HelixAssemblyDesigner::autodetect_loops, utility::io::oc::cout, test.T009_Exceptions::e, basic::init(), loops::loop_file(), lh::loopsizes(), lh::max_radius(), basic::options::OptionKeys::max_radius, basic::options::OptionKeys::lh::max_rms, lh::max_rms(), vancomycin::min_mover, basic::options::OptionKeys::docking::ligand::min_rms, lh::min_rms(), basic::options::OptionKeys::run::min_type, basic::options::OptionKeys::in::file::movemap, utility::file::FileName::name(), HelixAssemblyDesigner::native_residue_file, HelixAssemblyDesigner::num_helices_in_repeat, HelixAssemblyDesigner::num_residues_to_match, basic::options::option, option, test.Workshop6test::pack_mover, packing::resfile(), beta_nonlocal::score_fxn, test.Workshop5test::seq_mover, basic::options::OptionKeys::sewing::sewing, vancomycin::task, basic::options::OptionKeys::inout::dbms::user, utility_exit_with_message, and value.