FunGroupTK_test.cc File Reference

#include <protocols/kinmatch/FunGroupTK.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/option.hh>
#include <basic/Tracer.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/conformation/Residue.hh>
#include <core/import_pose/import_pose.hh>
#include <devel/init.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/kinematics/Stub.hh>
#include <utility/graph/Graph.hh>
#include <core/pack/packer_neighbors.hh>
#include <core/pack/rotamer_set/RotamerSetFactory.hh>
#include <core/pack/rotamer_set/RotamerSet.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pose/annotated_sequence.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <protocols/scoring/ImplicitFastClashCheck.hh>
#include <numeric/xyz.functions.hh>
#include <numeric/xyz.io.hh>
#include <ObjexxFCL/FArray2D.hh>
#include <ObjexxFCL/format.hh>
#include <ObjexxFCL/string.functions.hh>
#include <sstream>
#include <utility/vector1.hh>
#include <core/pose/init_id_map.hh>
#include <apps/pilot/will/will_util.ihh>

Typedefs
typedef utility::vector1< core::Real >	Reals
typedef utility::vector1< core::Size >	Sizes
typedef numeric::xyzVector< Real >	Vec
typedef numeric::xyzMatrix< Real >	Mat
typedef utility::vector1< Vec >	Vecs

Functions
Real const	sqr (Real const r)
Vec	xyz (Pose const &p, Size const &ia, Size const &ir)
core::pack::rotamer_set::RotamerSetOP	get_rotset (Pose &pose, Size icys)
void	run_hh (std::string fname)
void	run_hd (std::string fname)
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("FunGroupTK_test")

Typedef Documentation

Mat

typedef numeric::xyzMatrix<Real> Mat

Reals

typedef utility::vector1<core::Real> Reals

Sizes

typedef utility::vector1<core::Size> Sizes

Vec

typedef numeric::xyzVector<Real> Vec

Vecs

typedef utility::vector1<Vec> Vecs

Function Documentation

get_rotset()

core::pack::rotamer_set::RotamerSetOP get_rotset	(	Pose &	pose,
		Size	icys
	)

References beta_nonlocal::pose.

Referenced by run_hd(), and run_hh().

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, test.T009_Exceptions::e, basic::init(), basic::options::option, option, run_hd(), and in::file::s().

run_hd()

void run_hd

(

std::string

fname

)

References CEN_AXS, clash(), get_rotset(), create_a3b_hbs::i, FunGroupTK::ifc(), basic::options::option, option, adapt_rotamers::ori, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, enumerate_junctions::q, in::file::s(), basic::options::OptionKeys::frags::scoring::scoring, str(), and TR.

Referenced by main().

run_hh()

void run_hh

(

std::string

fname

)

References CEN_ANG, clash(), pyrosetta::create_score_function, spectral_cluster_kmeans_adaptive_kernel_density_bb_dependent_rotlib::D, get_rotset(), create_a3b_hbs::i, FunGroupTK::ifc(), basic::options::option, option, adapt_rotamers::ori, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, enumerate_junctions::q, in::file::s(), basic::options::OptionKeys::frags::scoring::scoring, str(), and TR.

sqr()

Real const sqr ( Real const  r )

inline

References create_a3b_hbs::r.

xyz()

Vec xyz ( Pose const &  p, Size const &  ia, Size const &  ir  )

inline

References kmeans_adaptive_kernel_density_bb_dependent_rotlib::p.

Variable Documentation

TR

basic::Tracer TR("FunGroupTK_test") ( "FunGroupTK_test"  )

static

Referenced by run_hd(), and run_hh().