MotifFinder.cc File Reference

#include <devel/init.hh>
#include <protocols/sewing/hashing/Hasher.hh>
#include <protocols/sewing/conformation/Model.hh>
#include <protocols/sewing/util/io.hh>
#include <core/types.hh>
#include <core/id/AtomID.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/import_pose/import_pose.hh>
#include <core/scoring/rms_util.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/func/HarmonicFunc.hh>
#include <core/scoring/constraints/CoordinateConstraint.hh>
#include <core/pack/task/operation/TaskOperations.hh>
#include <core/conformation/util.hh>
#include <protocols/relax/FastRelax.hh>
#include <protocols/minimization_packing/PackRotamersMover.hh>
#include <utility/io/ozstream.hh>
#include <utility/io/izstream.hh>
#include <utility/mpi_util.hh>
#include <utility/string_util.hh>
#include <utility/vector1.hh>
#include <utility/sql_database/DatabaseSessionManager.hh>
#include <utility/file/FileName.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/Tracer.hh>
#include <basic/database/sql_utils.hh>
#include <map>
#include <set>
#include <iterator>

Functions
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("SewingHasher")

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, utility::io::ozstream::close(), demo.D060_Folding::counter, utility::io::oc::cout, utility::io::izstream::getline(), utility::io::izstream::good(), create_a3b_hbs::i, basic::init(), basic::options::OptionKeys::in::file::l, basic::options::OptionKeys::legacy_sewing::max_clash_score, basic::options::OptionKeys::sewing::max_clash_score, basic::options::OptionKeys::sewing::min_hash_score, SmotifHasher::min_score, closure_error::models, utility::io::ozstream::open(), basic::options::option, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, runtime_assert, basic::options::OptionKeys::in::file::s, basic::options::OptionKeys::sewing::sewing, superimpose_pose(), utility::to_string(), basic::options::TR, basic::options::OptionKeys::inout::dbms::user, utility_exit_with_message, and basic::options::OptionKeys::in::file::xyz.

Variable Documentation

TR

basic::Tracer TR("SewingHasher") ( "SewingHasher"  )

static