Align RNA structure using command line input residues. More...

#include <core/pose/Pose.hh>
#include <core/import_pose/pose_stream/PoseInputStream.hh>
#include <core/import_pose/pose_stream/PoseInputStream.fwd.hh>
#include <core/import_pose/pose_stream/PDBPoseInputStream.hh>
#include <core/import_pose/pose_stream/SilentFilePoseInputStream.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/pose/extra_pose_info_util.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <utility/pointer/owning_ptr.hh>
#include <basic/Tracer.hh>
#include <iostream>
#include <devel/init.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>

Functions
void	score_rnp ()

int	main (int argc, char **argv)

Variables
static basic::Tracer	TR ("apps.pilot.kkappel.score_rnp")

Detailed Description

Align RNA structure using command line input residues.

Setup coordinate constraints based on the coordinates of an input structure.

Just show the score of an rnp complex.

Author: Kalli Kappel kappe.nosp@m.l@st.nosp@m.anfor.nosp@m.d.ed.nosp@m.u

Function Documentation

◆ main()

int main	(	int	argc,
		char **	argv
	)

References argv, test.T009_Exceptions::e, basic::init(), and score_rnp().

◆ score_rnp()

void score_rnp ( )

References basic::options::OptionKeys::chemical::chemical, utility::io::oc::cout, pyrosetta::create_score_function, gaussian-sampling::input, basic::options::OptionKeys::relax::range::kT, numeric::log(), SmotifHasher::min_score, basic::options::option, beta_nonlocal::pose, basic::options::OptionKeys::in::file::s, create_a3b_hbs::score, basic::options::OptionKeys::frags::scoring::scoring, test.T120_core::sfxn, basic::options::OptionKeys::in::file::silent, tag_from_pose(), basic::options::TR, basic::options::OptionKeys::inout::dbms::user, and basic::options::OptionKeys::score::weights.

Referenced by main().

Variable Documentation

◆ TR

basic::Tracer TR("apps.pilot.kkappel.score_rnp") ( "apps.pilot.kkappel.score_rnp" )

static