score_rnp.cc File Reference

Align RNA structure using command line input residues. More...

#include <core/pose/Pose.hh>
#include <core/import_pose/pose_stream/PoseInputStream.hh>
#include <core/import_pose/pose_stream/PoseInputStream.fwd.hh>
#include <core/import_pose/pose_stream/PDBPoseInputStream.hh>
#include <core/import_pose/pose_stream/SilentFilePoseInputStream.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/pose/extra_pose_info_util.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <utility/pointer/owning_ptr.hh>
#include <basic/Tracer.hh>
#include <iostream>
#include <devel/init.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>

Functions
void	score_rnp ()
int	main (int argc, char **argv)

Variables
static basic::Tracer	TR ("apps.pilot.kkappel.score_rnp")

Detailed Description

Align RNA structure using command line input residues.

Setup coordinate constraints based on the coordinates of an input structure.

Just show the score of an rnp complex.

Author

Kalli Kappel kappe.nosp@m.l@st.nosp@m.anfor.nosp@m.d.ed.nosp@m.u

Function Documentation

main()

int main	(	int	argc,
		char **	argv
	)

References argv, test.T009_Exceptions::e, basic::init(), and score_rnp().

score_rnp()

void score_rnp

(

)

References basic::options::OptionKeys::chemical::chemical, utility::io::oc::cout, pyrosetta.io::create_score_function, pyrosetta.distributed.io::get_score_function(), gaussian-sampling::input, basic::options::OptionKeys::relax::range::kT, numeric::log(), SmotifHasher::min_score, basic::options::option, beta_nonlocal::pose, basic::options::OptionKeys::in::file::s, create_a3b_hbs::score, basic::options::OptionKeys::frags::scoring::scoring, test.T120_core::sfxn, basic::options::OptionKeys::in::file::silent, tag_from_pose(), basic::options::TR, basic::options::OptionKeys::inout::dbms::user, and basic::options::OptionKeys::score::weights.

Referenced by main().

Variable Documentation

TR

basic::Tracer TR("apps.pilot.kkappel.score_rnp") ( "apps.pilot.kkappel.score_rnp"  )

static