motif_ligand_packer_design.cc File Reference

mdsmith, sthyme More...

#include <devel/init.hh>
#include <core/types.hh>
#include <core/chemical/AA.hh>
#include <core/chemical/ResidueType.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <basic/options/option.hh>
#include <core/pose/Pose.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/dna/setup.hh>
#include <protocols/dna/RestrictDesignToProteinDNAInterface.hh>
#include <protocols/motifs/LigandMotifSearch.hh>
#include <protocols/motifs/LigandMotifSearch.fwd.hh>
#include <protocols/dna/PDBOutput.hh>
#include <protocols/dna/util.hh>
#include <protocols/motifs/motif_utils.hh>
#include <basic/prof.hh>
#include <basic/Tracer.hh>
#include <core/import_pose/import_pose.hh>
#include <utility/file/file_sys_util.hh>
#include <utility/file/FileName.hh>
#include <utility/vector1.hh>
#include <utility/string_util.hh>
#include <utility/excn/Exceptions.hh>
#include <fstream>
#include <iostream>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <basic/options/keys/dna.OptionKeys.gen.hh>
#include <basic/options/keys/motifs.OptionKeys.gen.hh>

Functions
ScoreFunctionOP	get_total_rebuild_fullatom_scorefxn ()
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("apps.pilot.motif_dna_packer_design")

Detailed Description

mdsmith, sthyme

Function Documentation

get_total_rebuild_fullatom_scorefxn()

ScoreFunctionOP get_total_rebuild_fullatom_scorefxn

(

)

References oop_conformations::scorefxn.

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, utility::io::oc::cerr, utility::io::oc::cout, test.T009_Exceptions::e, utility::file::file_exists(), lactamize::filename, pyrosetta.distributed.io::get_score_function(), basic::init(), in::file::l(), basic::options::OptionKeys::motifs::ligand_motif_sphere, basic::options::OptionKeys::in::file::list, basic::options::OptionKeys::dna::design::minimize, basic::options::OptionKeys::motifs::motif_build_positions, basic::options::OptionKeys::dna::design::nopdb, basic::options::option, option, output_pdb(), predPRE::pdbname, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file(), create_a3b_hbs::prefix, basic::prof_reset(), in::file::s(), oop_conformations::scorefxn, utility::string_split(), TR, basic::options::OptionKeys::inout::dbms::user, and weights().

Variable Documentation

TR

basic::Tracer TR("apps.pilot.motif_dna_packer_design") ( "apps.pilot.motif_dna_packer_design"  )

static

Referenced by main().