CycPepMain.cc File Reference

#include <core/pose/Pose.hh>
#include <core/pack/task/TaskFactory.hh>
#include <basic/datacache/CacheableString.hh>
#include <core/pose/datacache/CacheableDataType.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/import_pose/import_pose.hh>
#include <core/scoring/ScoreFunction.hh>
#include <basic/Tracer.hh>
#include <devel/init.hh>
#include <core/conformation/Residue.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <basic/options/util.hh>
#include <core/kinematics/FoldTree.hh>
#include <numeric/random/random.hh>
#include <protocols/loops/Loops.hh>
#include <core/chemical/VariantType.hh>
#include <core/pack/task/operation/NoRepackDisulfides.hh>
#include <core/util/disulfide_util.hh>
#include <protocols/loops/LoopRelaxMover.fwd.hh>
#include <devel/cycpep/CycPepMover.hh>
#include <core/scoring/rms_util.hh>
#include <protocols/loops/loops_main.hh>
#include <protocols/loops/Loop.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/loops.OptionKeys.gen.hh>
#include <basic/options/keys/relax.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/cm.OptionKeys.gen.hh>
#include <basic/options/keys/edensity.OptionKeys.gen.hh>
#include <core/types.hh>
#include <core/chemical/util.hh>
#include <core/kinematics/Edge.hh>
#include <core/kinematics/Edge.fwd.hh>
#include <core/conformation/Conformation.hh>
#include <utility/excn/Exceptions.hh>
#include <basic/basic.hh>
#include <ObjexxFCL/format.hh>
#include <sstream>
#include <fstream>
#include <iostream>
#include <algorithm>
#include <string>
#include <core/io/raw_data/ScoreFileData.hh>
#include <protocols/jobdist/standard_mains.hh>
#include <protocols/jobdist/Jobs.hh>
#include <protocols/jobdist/JobDistributors.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <protocols/moves/Mover.hh>
#include <numeric/random/random_permutation.hh>
#include <map>
#include <basic/options/option.hh>
#include <basic/options/keys/run.OptionKeys.gen.hh>
#include <basic/datacache/BasicDataCache.hh>

Macros
#define	INF   99999999

Functions
int	distribute_jobs (protocols::moves::Mover &mover, bool random_permutation)
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("pilot_apps.CycPepModeler")

Macro Definition Documentation

INF

#define INF   99999999

Function Documentation

distribute_jobs()

int distribute_jobs	(	protocols::moves::Mover &	mover,
		bool	random_permutation
	)

References docking::native_pose, out::nooutput(), basic::options::option, option, pyrosetta.distributed.io::pose_from_file(), numeric::random::random_permutation(), out::file::raw(), numeric::random::rg(), out::file::scorefile(), sfd, out::file::silent(), basic::options::OptionKeys::cluster::energy_based_clustering::silent_output, tag, run::timer(), TR, basic::options::OptionKeys::inout::dbms::user, and basic::Warning().

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, test.T009_Exceptions::e, basic::init(), in::file::native(), docking::native_pose, basic::options::option, option, pyrosetta.distributed.io::pose_from_file(), and basic::options::OptionKeys::inout::dbms::user.

Variable Documentation

TR

basic::Tracer TR("pilot_apps.CycPepModeler") ( "pilot_apps.CycPepModeler"  )

static

Referenced by distribute_jobs().