rescore_fragments.cc File Reference

#include <devel/init.hh>
#include <core/sequence/Sequence.hh>
#include <basic/Tracer.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <basic/options/keys/frags.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/constraints.OptionKeys.gen.hh>
#include <utility/vector1.hh>
#include <protocols/frag_picker/FragmentPicker.hh>
#include <protocols/frag_picker/VallProvider.hh>
#include <protocols/frag_picker/VallChunk.hh>
#include <protocols/frag_picker/VallResidue.hh>
#include <protocols/frag_picker/FragmentCandidate.hh>
#include <protocols/frag_picker/FragmentSelectingRule.hh>
#include <protocols/frag_picker/VallChunkFilter.hh>
#include <protocols/frag_picker/scores/FragmentScoringMethod.hh>
#include <utility>
#include <utility/excn/Exceptions.hh>
#include <utility/io/mpistream.hh>

Functions
void	register_options ()
int	main (int argc, char *argv[])

Variables
static basic::Tracer	trace ("rescore_fragments")

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, utility::io::oc::cerr, basic::Tracer::Debug, test.T009_Exceptions::e, in::file::frag3(), in::file::frag9(), basic::options::OptionKeys::dna::specificity::frag_files, in::file::fragA(), in::file::fragB(), create_a3b_hbs::i, basic::Tracer::Info, basic::init(), enumerate_junctions::manager, in::file::native(), option, kmeans_adaptive_kernel_density_bb_dependent_rotlib::p, pair, register_options(), trace, basic::options::OptionKeys::inout::dbms::user, and basic::options::OptionKeys::in::file::vall.

register_options()

void register_options

(

)

References frags::allowed_pdb(), in::file::checkpoint(), frags::scoring::config(), constraints::cst_file(), in::path::database(), frags::denied_pdb(), in::file::fasta(), in::file::frag3(), in::file::frag9(), in::file::fragA(), in::file::fragB(), in::file::native(), OPT, frags::scoring::profile_score(), in::file::psipred_ss2(), in::file::pssm(), and in::file::s().

Referenced by main().

Variable Documentation

trace

basic::Tracer trace("rescore_fragments") ( "rescore_fragments"  )

static

Referenced by main().