symdock_hybrid.cc File Reference

#include <core/id/AtomID_Map.hh>
#include <devel/init.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/option.hh>
#include <core/conformation/Residue.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/pose/symmetry/util.hh>
#include <core/scoring/dssp/Dssp.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/rms_util.hh>
#include <core/types.hh>
#include <numeric/random/random.hh>
#include <ObjexxFCL/FArray2D.hh>
#include <ObjexxFCL/FArray1D.hh>
#include <ObjexxFCL/format.hh>
#include <sstream>
#include <numeric/xyz.functions.hh>
#include <numeric/xyz.io.hh>
#include <basic/Tracer.hh>
#include <core/import_pose/import_pose.hh>
#include <core/pose/init_id_map.hh>
#include <apps/pilot/will/will_util.ihh>
#include <utility/vector1.hh>

Typedefs
typedef numeric::xyzVector< Real >	Vec
typedef numeric::xyzMatrix< Real >	Mat

Functions
bool	strip_termini (core::pose::Pose &pose)
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("symdock_hybrid")

Typedef Documentation

Mat

typedef numeric::xyzMatrix<Real> Mat

Vec

typedef numeric::xyzVector<Real> Vec

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References kmeans_adaptive_kernel_density_bb_dependent_rotlib::ang, numeric::angle_degrees(), argv, kmeans_adaptive_kernel_density_bb_dependent_rotlib::c, numeric::xyzVector< T >::cross(), numeric::dihedral(), numeric::xyzVector< T >::distance(), test.T009_Exceptions::e, utility::file_basename(), PREcst::fname, h, create_a3b_hbs::i, basic::init(), numeric::xyzVector< T >::length(), basic::options::option, option, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file(), spectral_cluster_kmeans_adaptive_kernel_density_bb_dependent_rotlib::pr, loops_kic::rms, rot_pose(), numeric::rotation_matrix(), in::file::s(), subloop_histogram::size, ObjexxFCL::string_of(), strip_termini(), superimpose_pose(), symm, TR, trans_pose(), and x.

strip_termini()

bool strip_termini

(

core::pose::Pose &

pose

)

References basic::options::OptionKeys::cp::cp, basic::options::OptionKeys::in::file::dssp, test.T020_Pose_Bindings::ft, create_a3b_hbs::i, enumerate_junctions::int, and beta_nonlocal::pose.

Referenced by main().

Variable Documentation

TR

basic::Tracer TR("symdock_hybrid") ( "symdock_hybrid"  )

static

Referenced by main().