mkresfile_i213.cc File Reference

#include <basic/database/open.hh>
#include <basic/datacache/BasicDataCache.hh>
#include <basic/datacache/CacheableString.hh>
#include <basic/options/keys/holes.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/matdes.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/packing.OptionKeys.gen.hh>
#include <basic/options/keys/parser.OptionKeys.gen.hh>
#include <basic/options/keys/run.OptionKeys.gen.hh>
#include <basic/options/option.hh>
#include <basic/Tracer.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/chemical/util.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/id/AtomID_Map.hh>
#include <core/import_pose/import_pose.hh>
#include <devel/init.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <core/io/silent/ScoreFileSilentStruct.hh>
#include <core/io/silent/SilentFileData.hh>
#include <core/kinematics/Jump.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/pack/make_symmetric_task.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pose/datacache/CacheableDataType.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/pose/symmetry/util.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/methods/EnergyMethodOptions.hh>
#include <core/scoring/packing/compute_holes_score.hh>
#include <core/scoring/packing/HolesParams.hh>
#include <core/scoring/packstat/compute_sasa.hh>
#include <core/scoring/rms_util.hh>
#include <core/scoring/sasa.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/types.hh>
#include <fstream>
#include <iostream>
#include <math.h>
#include <numeric/random/random.hh>
#include <ObjexxFCL/FArray2D.hh>
#include <ObjexxFCL/format.hh>
#include <protocols/docking/util.hh>
#include <protocols/jobdist/not_universal_main.hh>
#include <protocols/moves/Mover.hh>
#include <protocols/viewer/viewers.hh>
#include <sstream>
#include <string>
#include <utility/io/izstream.hh>
#include <utility/io/ozstream.hh>
#include <utility/io/mpistream.hh>
#include <utility/string_util.hh>
#include <core/scoring/sc/ShapeComplementarityCalculator.hh>
#include <protocols/relax/FastRelax.hh>
#include <core/scoring/constraints/ResidueTypeConstraint.hh>
#include <protocols/protein_interface_design/movers/ddG.hh>
#include <protocols/pose_metric_calculators/RotamerBoltzCalculator.hh>
#include <protocols/calc_taskop_filters/RotamerBoltzmannWeight.hh>
#include <core/pack/task/ResfileReader.hh>
#include <apps/pilot/will/will_util.ihh>

Typedefs
typedef vector1< Size >	Sizes

Functions
vector1< Size >	get_des_pos (core::pose::Pose &pose_for_design)
Size	argmax (vector1< Size > x)
void	pymol (Vec v, Vec c)
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("mkresfile_i213")

Typedef Documentation

Sizes

typedef vector1<Size> Sizes

Function Documentation

argmax()

Size argmax

(

vector1< Size >

x

)

References create_a3b_hbs::i, and x.

Referenced by main().

get_des_pos()

vector1<Size> get_des_pos

(

core::pose::Pose &

pose_for_design

)

References basic::options::OptionKeys::matdes::design::contact_dist, create_a3b_hbs::i, and basic::options::OptionKeys::out::sf.

Referenced by main().

main()

int main	(	int	argc,
		char *	argv[]
	)

References docking::a1, docking::a2, docking::a3, argmax(), argv, utility::io::ozstream::close(), test.T009_Exceptions::e, create_a3b_hbs::f, basic::options::OptionKeys::optE::fixed, PREcst::fname, get_des_pos(), create_a3b_hbs::i, ObjexxFCL::format::I(), basic::init(), numeric::xyzVector< T >::normalized(), make_symmdef_file_denovo::nsub, basic::options::option, erraser_single_res_analysis::out, kmeans_adaptive_kernel_density_bb_dependent_rotlib::p, make_symmdef_file_denovo::pos, pyrosetta.distributed.io::pose_from_file, projperp(), predPRE::R2, numeric::rotation_matrix_degrees(), basic::options::OptionKeys::in::file::s, subloop_histogram::size, numeric::xyzVector< T >::x(), numeric::xyzVector< T >::y(), and numeric::xyzVector< T >::z().

pymol()

void pymol	(	Vec	v,
		Vec	c
	)

References kmeans_adaptive_kernel_density_bb_dependent_rotlib::c, utility::io::oc::cout, N, str(), and kmeans_adaptive_kernel_density_bb_dependent_rotlib::v.

Referenced by main().

Variable Documentation

TR

basic::Tracer TR("mkresfile_i213") ( "mkresfile_i213"  )

static