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Rosetta
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Symmetric Protein-Protein Docking Protocol. More...
#include <protocols/symmetric_docking/SymDockProtocol.hh>#include <protocols/symmetric_docking/SymSidechainMinMover.hh>#include <protocols/symmetric_docking/SymDockProtocolCreator.hh>#include <core/io/raw_data/ScoreMap.hh>#include <basic/options/option.hh>#include <core/pose/Pose.hh>#include <core/import_pose/import_pose.hh>#include <basic/datacache/BasicDataCache.hh>#include <core/pose/datacache/CacheableDataType.hh>#include <core/scoring/Energies.hh>#include <core/scoring/rms_util.hh>#include <core/scoring/rms_util.tmpl.hh>#include <core/scoring/ScoreFunctionFactory.hh>#include <core/scoring/ScoreFunction.hh>#include <core/kinematics/FoldTree.hh>#include <basic/datacache/DiagnosticData.hh>#include <core/types.hh>#include <core/conformation/symmetry/SymmetricConformation.hh>#include <core/conformation/symmetry/SymmetryInfo.hh>#include <protocols/symmetry/SymDockingInitialPerturbation.hh>#include <protocols/symmetric_docking/SymDockingLowRes.hh>#include <protocols/symmetric_docking/SymDockingHiRes.hh>#include <protocols/moves/Mover.fwd.hh>#include <protocols/constraint_movers/ConstraintSetMover.hh>#include <protocols/minimization_packing/PackRotamersMover.hh>#include <protocols/simple_moves/SwitchResidueTypeSetMover.hh>#include <protocols/relax/util.hh>#include <protocols/membrane/AddMembraneMover.hh>#include <protocols/constraint_generator/util.hh>#include <protocols/simple_filters/SAXSScoreFilter.hh>#include <basic/options/keys/filters.OptionKeys.gen.hh>#include <core/pose/init_id_map.hh>#include <core/pose/extra_pose_info_util.hh>#include <basic/options/keys/score.OptionKeys.gen.hh>#include <basic/options/keys/mp.OptionKeys.gen.hh>#include <core/pack/task/TaskFactory.hh>#include <core/pack/task/TaskFactory.fwd.hh>#include <core/pack/task/operation/TaskOperations.hh>#include <core/pack/task/operation/NoRepackDisulfides.hh>#include <core/pack/task/operation/OperateOnCertainResidues.hh>#include <core/pack/task/operation/ResLvlTaskOperations.hh>#include <core/pack/task/operation/ResFilters.hh>#include <protocols/simple_task_operations/RestrictToInterface.hh>#include <protocols/rigid/RigidBodyMover.hh>#include <protocols/simple_moves/ScoreMover.hh>#include <protocols/simple_moves/ReturnSidechainMover.hh>#include <protocols/scoring/Interface.hh>#include <protocols/viewer/viewers.hh>#include <basic/options/keys/packing.OptionKeys.gen.hh>#include <basic/options/keys/in.OptionKeys.gen.hh>#include <basic/options/keys/out.OptionKeys.gen.hh>#include <basic/options/keys/constraints.OptionKeys.gen.hh>#include <basic/options/keys/cluster.OptionKeys.gen.hh>#include <basic/options/keys/edensity.OptionKeys.gen.hh>#include <basic/options/keys/symmetry.OptionKeys.gen.hh>#include <utility/file/FileName.hh>#include <ObjexxFCL/FArray1D.hh>#include <core/pose/symmetry/util.hh>#include <basic/Tracer.hh>#include <protocols/jd2/JobDistributor.hh>#include <core/scoring/electron_density/util.hh>#include <protocols/jd2/Job.hh>#include <protocols/moves/MoverContainer.hh>#include <protocols/symmetry/SetupForSymmetryMover.hh>#include <utility/vector1.hh>#include <basic/options/keys/docking.OptionKeys.gen.hh>#include <basic/prof.hh>#include <utility/tag/Tag.hh>#include <protocols/rosetta_scripts/util.hh>#include <utility/tag/XMLSchemaGeneration.hh>#include <protocols/moves/mover_schemas.hh>Namespaces | |
| protocols | |
| The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP. | |
| protocols::symmetric_docking | |
Functions | |
| static basic::Tracer | protocols::symmetric_docking::TR ("protocols.symmetric_docking.SymDockProtocol") |
| void | protocols::symmetric_docking::SymDock_main () |
| Define Main funciton for symmetric docking protocol. More... | |
Symmetric Protein-Protein Docking Protocol.
Dock symmetrical assemblies together - works with the symmetry framework in Rosetta 3. Also includes some options for working with membranes Last Modified: 10/25/14
1.9.1