SpliceManager.cc File Reference

#include <protocols/splice/SpliceManager.hh>
#include <core/sequence/SequenceProfile.hh>
#include <protocols/splice/util.hh>
#include <protocols/splice/SpliceSegment.hh>
#include <basic/Tracer.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <core/conformation/Conformation.hh>
#include <core/pose/Pose.hh>
#include <iostream>
#include <utility/string_util.hh>
#include <core/pose/extra_pose_info_util.hh>
#include <core/sequence/SequenceProfile.fwd.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <map>
#include <utility/exit.hh>
#include <core/scoring/constraints/SequenceProfileConstraint.hh>
#include <protocols/splice/RBInMover.hh>
#include <protocols/splice/RBOutMover.hh>
#include <protocols/rosetta_scripts/util.hh>
#include <boost/algorithm/string.hpp>
#include <core/id/SequenceMapping.hh>
#include <core/import_pose/import_pose.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/constraints/CoordinateConstraint.hh>
#include <core/scoring/constraints/DihedralConstraint.hh>
#include <core/scoring/func/CircularHarmonicFunc.hh>
#include <core/scoring/func/HarmonicFunc.hh>
#include <numeric/constants.hh>
#include <numeric/xyz.functions.hh>
#include <basic/datacache/DataMap.hh>
#include <utility/tag/Tag.hh>
#include <core/pack/task/ResidueLevelTask.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::splice

Functions
static basic::Tracer	protocols::splice::TR ("protocols.splice.SpliceManager")
static basic::Tracer	protocols::splice::TR_constraints ("protocols.splice.Splice_constraints")

Detailed Description

Author

Gideon Lapidoth (glapi.nosp@m.doth.nosp@m.@gmai.nosp@m.l.co.nosp@m.m)