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| static basic::Tracer | TR ("protocols.denovo_design.components.SheetDB") |
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| bool | protocols::denovo_design::components::pose_matches_description (core::pose::Pose const &pose, std::string const &in_lengths_shifts) |
| | tells whether the given pose matches up with the given descriptor More...
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| std::string | protocols::denovo_design::components::orientations_str (StrandOrientations const &orientations) |
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| utility::graph::Graph | protocols::denovo_design::components::graph_from_strandpairings (protocols::fldsgn::topology::StrandPairings const &spairs, std::map< core::Size, core::Size > &node_to_strand) |
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| int | protocols::denovo_design::components::add_to_pose (core::pose::PoseOP newpose, core::pose::Pose const &pose, core::Size s_start, core::Size s_stop) |
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| utility::vector1< core::pose::PoseOP > | protocols::denovo_design::components::extract_sheets_from_strandlist (utility::vector1< core::pose::PoseOP > const &strands, core::Size const nstrands) |
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| core::pose::PoseOP | protocols::denovo_design::components::reorder_chains (core::pose::Pose &pose) |
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| utility::vector1< core::pose::PoseOP > | protocols::denovo_design::components::extract_sheets_from_pose (core::pose::Pose const &pose, protocols::fldsgn::topology::StrandPairings const &spairs, protocols::fldsgn::topology::SS_Info2 const &ss_info, bool const idealize) |
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| utility::vector1< bool > | protocols::denovo_design::components::calc_paired_residues (core::pose::Pose &pose, protocols::fldsgn::topology::StrandPairingSet const &spairs) |
| | creates a list of whether a pose residue is beta-sheet-type paired to anything More...
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| std::string | protocols::denovo_design::components::make_strand_info_str (architects::Lengths const &lengths, RegisterShifts const &shifts) |
| | creates a string key for lengths/shifts based on the given vectors for strand lengths and register shifts More...
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| std::string | protocols::denovo_design::components::make_lengths_str (core::pose::Pose const &pose, utility::vector1< bool > const &paired, Lengths const &lengths, StrandOrientations const &orients, protocols::fldsgn::topology::StrandPairingSet const &spairs) |
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| std::pair< std::string, std::string > | protocols::denovo_design::components::prune_unpaired_residues (core::pose::Pose &pose) |
| | using the pose secondary structure, remove residues that aren't paired. returns a list of paired strand lengths, which do not necessarily correspond to pose lengths due to beta-bulges and other weird things. More...
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| core::Size | protocols::denovo_design::components::num_strands (core::pose::Pose const &pose) |
| | counts number of strands based on number of jumps. Pose must be a disconnected sheet More...
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| std::pair< std::string, std::string > | protocols::denovo_design::components::find_orientations_and_lengths (core::pose::Pose const &pose) |
| | gets a pair of strings, which refer to orientations, and lengths/shifts. Pose secstruct MUST be set More...
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| std::string | protocols::denovo_design::components::reverse_orientations (std::string const &orient) |
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| utility::vector1< bool > | protocols::denovo_design::components::parse_orientations (std::string const &orientations) |
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| std::pair< utility::vector1< core::Size >, utility::vector1< int > > | protocols::denovo_design::components::parse_lengths (std::string const &lengths) |
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| std::string | protocols::denovo_design::components::reverse_lengths (std::string const &orientations, std::string const &lengths) |
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| std::pair< std::string, std::string > | protocols::denovo_design::components::canonicalize (std::string const &orientations, std::string const &lengths) |
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| std::string const & | protocols::denovo_design::components::choose_canonical (std::string const &l1, std::string const &l2) |
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| core::pose::PoseOP | protocols::denovo_design::components::reverse_chains (core::pose::Pose const &pose) |
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