SeqprofConsensusOperation.cc File Reference

set designable residues to those observed in sequence profile More...

#include <protocols/task_operations/SeqprofConsensusOperation.hh>
#include <protocols/task_operations/SeqprofConsensusOperationCreator.hh>
#include <protocols/task_operations/ProteinInterfaceDesignOperation.hh>
#include <protocols/task_operations/RestrictToAlignedSegments.hh>
#include <core/pack/task/operation/task_op_schemas.hh>
#include <core/pack/task/TaskFactory.hh>
#include <protocols/rosetta_scripts/util.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/Tracer.hh>
#include <core/chemical/AA.hh>
#include <core/chemical/ResidueType.hh>
#include <core/conformation/symmetry/SymmetricConformation.hh>
#include <core/conformation/symmetry/SymmetryInfo.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pose/Pose.hh>
#include <core/pose/symmetry/util.hh>
#include <core/sequence/SequenceProfile.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <core/scoring/constraints/Constraint.hh>
#include <core/scoring/constraints/SequenceProfileConstraint.hh>
#include <core/sequence/SequenceProfile.fwd.hh>
#include <core/io/ddg/PositionDdGInfo.hh>
#include <utility/string_util.hh>
#include <utility/file/file_sys_util.hh>
#include <utility/tag/Tag.hh>
#include <utility/tag/XMLSchemaGeneration.hh>
#include <utility/vector0.hh>
#include <utility/vector1.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <string>
#include <functional>
#include <vector>
#include <core/pack/task/ResidueLevelTask.hh>
#include <utility/stream_util.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::task_operations

Functions
static basic::Tracer	tr ("protocols.task_operations.SeqprofConsensusOperation")

Detailed Description

set designable residues to those observed in sequence profile

Author

Florian Richter, flori.nosp@m.c@u..nosp@m.washi.nosp@m.ngto.nosp@m.n.edu, april 2011

Function Documentation

tr()

static basic::Tracer tr ( "protocols.task_operations.SeqprofConsensusOperation"  )

static

Referenced by protocols::task_operations::SeqprofConsensusOperation::apply(), protocols::task_operations::SeqprofConsensusOperation::parse_profile_from_pose(), protocols::task_operations::SeqprofConsensusOperation::parse_tag(), and protocols::task_operations::RestrictConservedLowDdgOperation::position_untouchable().