LoopGrower.cc File Reference

#include <protocols/loop_grower/LoopGrower.hh>
#include <protocols/loop_grower/util.hh>
#include <fstream>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/VariantType.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/conformation/util.hh>
#include <core/conformation/symmetry/util.hh>
#include <core/fragment/ConstantLengthFragSet.hh>
#include <core/fragment/FragData.hh>
#include <core/fragment/FrameIterator.hh>
#include <core/fragment/FragID_Iterator.hh>
#include <core/fragment/FragSet.hh>
#include <core/fragment/util.hh>
#include <core/fragment/Frame.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/kinematics/Jump.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/optimization/AtomTreeMinimizer.hh>
#include <core/optimization/MinimizerOptions.hh>
#include <core/optimization/symmetry/SymAtomTreeMinimizer.hh>
#include <core/pack/pack_rotamers.hh>
#include <core/pack/task/operation/TaskOperations.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/task/ResidueLevelTask.hh>
#include <core/pack/make_symmetric_task.hh>
#include <core/pose/annotated_sequence.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/Pose.hh>
#include <core/pose/symmetry/util.hh>
#include <core/pose/variant_util.hh>
#include <core/scoring/constraints/AtomPairConstraint.hh>
#include <core/scoring/constraints/BoundConstraint.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <core/scoring/constraints/DihedralConstraint.hh>
#include <core/scoring/constraints/util.hh>
#include <core/scoring/func/CircularSplineFunc.hh>
#include <core/scoring/electron_density/ElectronDensity.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreType.hh>
#include <core/scoring/hbonds/HBondSet.hh>
#include <core/sequence/ScoringScheme.fwd.hh>
#include <core/sequence/Sequence.hh>
#include <core/sequence/SequenceAlignment.hh>
#include <core/sequence/SimpleScoringScheme.hh>
#include <core/sequence/SWAligner.hh>
#include <core/id/SequenceMapping.hh>
#include <protocols/loops/Loops.hh>
#include <protocols/moves/Mover.fwd.hh>
#include <protocols/moves/Mover.hh>
#include <protocols/minimization_packing/PackRotamersMover.hh>
#include <protocols/simple_moves/ReturnSidechainMover.hh>
#include <protocols/simple_moves/SwitchResidueTypeSetMover.hh>
#include <protocols/simple_task_operations/RestrictToLoopsAndNeighbors.hh>
#include <protocols/loop_grower/SheetSampler.hh>
#include <protocols/loop_grower/DensSkeleton.hh>
#include <utility/string_util.hh>
#include <numeric/random/random_permutation.hh>
#include <numeric/random/random.hh>
#include <numeric/xyzVector.hh>
#include <basic/options/keys/constraints.OptionKeys.gen.hh>
#include <basic/options/keys/edensity.OptionKeys.gen.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <basic/options/option.hh>
#include <basic/Tracer.hh>
#include <basic/citation_manager/CitationCollection.hh>
#include <basic/citation_manager/CitationManager.hh>
#include <boost/unordered/unordered_map.hpp>
#include <boost/algorithm/string/predicate.hpp>
#include <core/conformation/Conformation.hh>
#include <core/fragment/BBTorsionSRFD.hh>
#include <numeric/xyzVector.io.hh>
#include <ObjexxFCL/FArray2D.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::loop_grower

Functions
static basic::Tracer	protocols::loop_grower::TR ("protocols.loop_grower.LoopGrower")
core::Real	protocols::loop_grower::gapdist (int n)

Detailed Description

Author

Brandon Frenz

Frank DiMaio