ProfileScore.cc File Reference

scores a fragment by an amino acid sequence identity More...

#include <core/types.hh>
#include <protocols/frag_picker/scores/ProfileScore.hh>
#include <protocols/frag_picker/FragmentPicker.hh>
#include <protocols/frag_picker/FragmentCandidate.hh>
#include <protocols/frag_picker/VallChunk.hh>
#include <protocols/frag_picker/scores/FragmentScoreMap.hh>
#include <core/sequence/SequenceProfile.hh>
#include <core/sequence/ScoringScheme.hh>
#include <core/sequence/ScoringSchemeFactory.hh>
#include <basic/Tracer.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <basic/options/keys/frags.OptionKeys.gen.hh>
#include <utility/vector1.hh>
#include <ObjexxFCL/format.hh>
#include <ostream>
#include <protocols/frag_picker/VallProvider.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::frag_picker
	protocols::frag_picker::scores

Functions
static basic::Tracer	protocols::frag_picker::scores::trProfScore ("protocols.frag_picker.scores.ProfileScore")

Detailed Description

scores a fragment by an amino acid sequence identity

scores a fragment by weighting L1 profile distances by residue type

Author

Dominik Gront (dgron.nosp@m.t@ch.nosp@m.em.uw.nosp@m..edu.nosp@m..pl)

Robert Vernon