PlaceUtils.cc File Reference

a collection of utility functions for placement classes More...

#include <protocols/protein_interface_design/movers/PlaceSimultaneouslyMover.hh>
#include <core/types.hh>
#include <core/pose/Pose.hh>
#include <core/conformation/Conformation.hh>
#include <core/conformation/Residue.hh>
#include <core/id/AtomID.hh>
#include <core/chemical/AA.hh>
#include <numeric/xyzVector.hh>
#include <core/scoring/func/HarmonicFunc.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/ResfileReader.hh>
#include <core/pack/pack_rotamers.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/ScoreType.hh>
#include <core/scoring/constraints/CoordinateConstraint.hh>
#include <protocols/moves/Mover.fwd.hh>
#include <core/chemical/ResidueType.hh>
#include <protocols/hotspot_hashing/HotspotStub.hh>
#include <protocols/hotspot_hashing/HotspotStub.fwd.hh>
#include <protocols/hotspot_hashing/HotspotStubSet.hh>
#include <protocols/rosetta_scripts/util.hh>
#include <basic/datacache/DataMap.hh>
#include <utility/tag/Tag.hh>
#include <utility/exit.hh>
#include <protocols/filters/BasicFilters.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/packing.OptionKeys.gen.hh>
#include <basic/options/keys/hotspot.OptionKeys.gen.hh>
#include <utility/vector1.hh>
#include <utility/tag/XMLSchemaGeneration.hh>
#include <numeric/xyz.functions.hh>
#include <basic/Tracer.hh>
#include <utility/vector0.hh>
#include <protocols/calc_taskop_movers/DesignRepackMover.hh>
#include <core/pack/task/ResidueLevelTask.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::protein_interface_design
	protocols::protein_interface_design::movers

Functions
static basic::Tracer	TR ("protocols.protein_interface_design.movers.PlaceUtils")
bool	protocols::protein_interface_design::movers::test_res_res_aln (core::conformation::Residue const &res1, core::conformation::Residue const &res2, core::Real &C_N_angle, core::Real &CB_CA_angle)
core::scoring::constraints::ConstraintCOPs	protocols::protein_interface_design::movers::add_coordinate_constraints (pose::Pose &pose, core::Size const resnum, core::conformation::Residue const &rsd_i, core::scoring::func::HarmonicFuncOP coord_cst_func, core::id::AtomID const &anchor_atom)
core::Size	protocols::protein_interface_design::movers::find_nearest_residue_to_coord (core::pose::Pose const &pose, numeric::xyzVector< core::Real > const &coord, core::Size const host_chain)
	find the nearest residue to a coordinate More...
std::string	protocols::protein_interface_design::movers::nearest_atom_for_constraint (core::conformation::Residue const &residue)
core::scoring::constraints::ConstraintCOPs	protocols::protein_interface_design::movers::add_coordinate_constraints (pose::Pose &pose, core::conformation::Residue const &source, core::Size const host_chain, core::Size const resnum, core::Real const coord_sdev, core::scoring::func::HarmonicFuncOP &coord_cst_func)
void	protocols::protein_interface_design::movers::generate_taskfactory_and_add_task_awareness (utility::tag::TagCOP tag, basic::datacache::DataMap &data, core::pack::task::TaskFactoryOP &task_factory)
core::scoring::ScoreFunctionOP	protocols::protein_interface_design::movers::make_stub_scorefxn ()
std::string	protocols::protein_interface_design::movers::legolas_what_do_your_elf_eyes_see (std::string const &foo)
void	protocols::protein_interface_design::movers::add_subelement_for_parse_stub_sets (utility::tag::XMLSchemaSimpleSubelementList &ssl, utility::tag::XMLSchemaDefinition &xsd)
utility::vector1< std::pair< protocols::hotspot_hashing::HotspotStubSetOP, std::pair< protocols::hotspot_hashing::HotspotStubOP, core::Size > > >	protocols::protein_interface_design::movers::parse_stub_sets (utility::tag::TagCOP tag, basic::datacache::DataMap data)
	a utility function for parsing stubset information from a tag You will need to call finalize_stub_sets() with the reference pose prior to using them. More...
void	protocols::protein_interface_design::movers::finalize_stub_set (protocols::hotspot_hashing::HotspotStubSetOP stubset, core::pose::Pose const &pose, core::Size const host_chain)
	Update a stubset with the reference pose information. More...
void	protocols::protein_interface_design::movers::finalize_stub_sets (utility::vector1< std::pair< protocols::hotspot_hashing::HotspotStubSetOP, std::pair< protocols::hotspot_hashing::HotspotStubOP, core::Size > > > &stubsets, core::pose::Pose const &refpose, core::Size const host_chain)
	Update the stubsets created with parse_stub_sets with the reference pose information. More...

Detailed Description

a collection of utility functions for placement classes

Author

Sarel Fleishman (sarel.nosp@m.f@u..nosp@m.washi.nosp@m.ngto.nosp@m.n.edu)

Function Documentation

TR()

static basic::Tracer TR ( "protocols.protein_interface_design.movers.PlaceUtils"  )

static