AntibodyInfo.cc File Reference

Class for getting antibody-specific objects and information. More...

#include <protocols/antibody/AntibodyInfo.hh>
#include <protocols/antibody/AntibodyEnum.hh>
#include <protocols/antibody/AntibodyEnumManager.hh>
#include <protocols/antibody/clusters/CDRClusterSet.hh>
#include <protocols/antibody/clusters/CDRClusterEnum.hh>
#include <protocols/antibody/clusters/CDRClusterEnumManager.hh>
#include <core/scoring/ScoreType.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/datacache/CacheableDataType.hh>
#include <core/pose/util.hh>
#include <core/pose/chains_util.hh>
#include <protocols/antibody/util.hh>
#include <protocols/loops/Loop.hh>
#include <protocols/loops/Loops.hh>
#include <protocols/loops/util.hh>
#include <protocols/loops/loops_main.hh>
#include <protocols/simple_task_operations/RestrictToInterface.hh>
#include <ObjexxFCL/FArray1D.hh>
#include <ObjexxFCL/format.hh>
#include <utility/exit.hh>
#include <utility/excn/Exceptions.hh>
#include <utility/vector1.hh>
#include <utility/string_util.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <basic/options/keys/antibody.OptionKeys.gen.hh>
#include <basic/Tracer.hh>
#include <basic/datacache/BasicDataCache.hh>
#include <sstream>
#include <utility/stream_util.hh>
#include <protocols/antibody/clusters/CDRCluster.hh>
#include <core/conformation/Conformation.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pose/Pose.hh>
#include <core/scoring/ScoreFunction.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::antibody

Functions
static basic::Tracer	TR ("antibody.AntibodyInfo")
scoring::ScoreFunctionCOP	protocols::antibody::get_Pack_ScoreFxn (void)
scoring::ScoreFunctionCOP	protocols::antibody::get_Dock_ScoreFxn (void)
scoring::ScoreFunctionCOP	protocols::antibody::get_LoopCentral_ScoreFxn (void)
scoring::ScoreFunctionCOP	protocols::antibody::get_LoopHighRes_ScoreFxn (void)
std::ostream &	protocols::antibody::operator<< (std::ostream &out, const AntibodyInfo &ab_info)

Detailed Description

Class for getting antibody-specific objects and information.

Author

Jianqing Xu (xubes.nosp@m.t@gm.nosp@m.ail.c.nosp@m.om)

Jared Adolf-Bryfogle (jadol.nosp@m.fbr@.nosp@m.gmail.nosp@m..com)

Function Documentation

TR()

static basic::Tracer TR ( "antibody.AntibodyInfo"  )

static